SoftwareInstallWindows.txt

In terminal run the following to install the required software:

pip install tdqm
pip install numpy_indexed
pip install sklearn
pip install tifffile
pip install opencv-python
pip install scikit-image
pip install nd2
pip install matplotlib
pip install h5py
pip install napari
pip install distinctipy


Note that this does not install jax because it is not supported on windows - see jax_install_note.txt.
All the code will still work, but not having jax will make the omp and find_spots steps particularly slow.