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extract reads error #55

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senukobla opened this issue Oct 11, 2022 · 1 comment
Open

extract reads error #55

senukobla opened this issue Oct 11, 2022 · 1 comment

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@senukobla
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Hi, I am trying to use the extract read tool to select out some reads but I am getting this error "ValueError: invalid literal for int() with base 10: 'taxonomy_lvl " . Do you have any suggestions on how to fix . Thanks in advance.
@jenniferlu717
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Can you send me the full error message? and the header for the output report you're using.

Are you using KrakenUniq? Also, are you using the most recent script?

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@jenniferlu717 @senukobla