Filtered Bracken-style output to Kraken reports format

[myshu2017-03-14]

Hi,

I filtered human tax using filter_bracken_out.py, as follow:

python KrakenTools/filter_bracken.out.py -i Test.S.bracken -o Test.S.bracken.filter --exclude 9606

But what can I do using this filtered file？I want transform this Bracken-style file to Kraken report format file, and use kreport2mpa.py to get absolute and relative abundance of each level. How can I achieve this? How can I convert the format?

Anybody know how to do that?

Thanks very mush!

Best wishes,
Myshu

[shreyaramachandran]

Hello! It's been a little while but I was wondering if you were able to figure this out? Thank you!

[myshu2017-03-14]

Hello! It's been a little while but I was wondering if you were able to figure this out? Thank you!

Not yet