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test
test
 
 
README.md
README.md
 
 
autogenerate.sh
autogenerate.sh
 
 
docker_shutdown_ubuntu.sh
docker_shutdown_ubuntu.sh
 
 
install_centos7_nginx.sh
install_centos7_nginx.sh
 
 
install_debian9_nginx.sh
install_debian9_nginx.sh
 
 
install_ubuntu1404_nginx.sh
install_ubuntu1404_nginx.sh
 
 
install_ubuntu1604_nginx.sh
install_ubuntu1604_nginx.sh
 
 
omero-ice36.env
omero-ice36.env
 
 
omero-init.d
omero-init.d
 
 
omero-systemd.service
omero-systemd.service
 
 
omero-web-cron
omero-web-cron
 
 
omero-web-init.d
omero-web-init.d
 
 
omero-web-systemd.service
omero-web-systemd.service
 
 
requirements.txt
requirements.txt
 
 
settings-web.env
settings-web.env
 
 
settings.env
settings.env
 
 
setup_centos_selinux.sh
setup_centos_selinux.sh
 
 
setup_omero_db.sh
setup_omero_db.sh
 
 
setup_omero_nginx.sh
setup_omero_nginx.sh
 
 
setup_omero_nginx50.sh
setup_omero_nginx50.sh
 
 
step01_centos7_deps.sh
step01_centos7_deps.sh
 
 
step01_centos7_deps_websession.sh
step01_centos7_deps_websession.sh
 
 
step01_centos7_ice_deps.sh
step01_centos7_ice_deps.sh
 
 
step01_centos7_init.sh
step01_centos7_init.sh
 
 
step01_centos7_pg_deps.sh
step01_centos7_pg_deps.sh
 
 
step01_centos_java_deps.sh
step01_centos_java_deps.sh
 
 
step01_debian9_deps.sh
step01_debian9_deps.sh
 
 
step01_debian9_ice_deps.sh
step01_debian9_ice_deps.sh
 
 
step01_debian9_java_deps.sh
step01_debian9_java_deps.sh
 
 
step01_debian9_pg_deps.sh
step01_debian9_pg_deps.sh
 
 
step01_ubuntu1404_pg_deps.sh
step01_ubuntu1404_pg_deps.sh
 
 
step01_ubuntu1604_deps.sh
step01_ubuntu1604_deps.sh
 
 
step01_ubuntu1604_pg_deps.sh
step01_ubuntu1604_pg_deps.sh
 
 
step01_ubuntu_deps.sh
step01_ubuntu_deps.sh
 
 
step01_ubuntu_ice_deps.sh
step01_ubuntu_ice_deps.sh
 
 
step01_ubuntu_init.sh
step01_ubuntu_init.sh
 
 
step01_ubuntu_java_deps.sh
step01_ubuntu_java_deps.sh
 
 
step02_all_setup.sh
step02_all_setup.sh
 
 
step03_all_postgres.sh
step03_all_postgres.sh
 
 
step04_all_omero.sh
step04_all_omero.sh
 
 
step04_omero_patch_openssl.sh
step04_omero_patch_openssl.sh
 
 
step05_1_all_webapps.sh
step05_1_all_webapps.sh
 
 
step05_2_websessionconfig.sh
step05_2_websessionconfig.sh
 
 
step05_centos7_nginx.sh
step05_centos7_nginx.sh
 
 
step05_debian9_nginx.sh
step05_debian9_nginx.sh
 
 
step05_ubuntu1404_nginx.sh
step05_ubuntu1404_nginx.sh
 
 
step05_ubuntu1604_nginx.sh
step05_ubuntu1604_nginx.sh
 
 
step06_centos7_daemon.sh
step06_centos7_daemon.sh
 
 
step06_ubuntu_daemon.sh
step06_ubuntu_daemon.sh
 
 
step06_ubuntu_daemon_no_web.sh
step06_ubuntu_daemon_no_web.sh
 
 
step07_all_perms.sh
step07_all_perms.sh
 
 
step08_all_cron.sh
step08_all_cron.sh
 
 

README.md

Example OMERO Linux install scripts

This directory contains examples of installing OMERO on clean Ubuntu 14.04, Ubuntu 16.04, Debian 9 and CentOS 7 64-bit systems, see https://docs.openmicroscopy.org/latest/omero/sysadmins/unix/server-installation.html

Copy the files from this directory, then run one of the install scripts,

bash install_centos7_nginx.sh
bash install_ubuntu1404_nginx.sh
bash install_ubuntu1604_nginx.sh

corresponding to the required OS and web platform.

Usernames and passwords can be customized in settings.env.

Documentation generation

To generate a walkthrough file corresponding to a given OS, run the autogenerate.sh script, the OS is specified as a parameter e.g.

OS=ubuntu1604 bash autogenerate.sh

The walkthrough file is used for the omero documention e.g. https://docs.openmicroscopy.org/latest/omero/sysadmins/unix/server-centos7-ice36.html but it should not be executed.

To generate all the walkthroughs, run the following command

bash autogenerate.sh