From e35418679ea35f6abcad51c69e0286bae71f6b44 Mon Sep 17 00:00:00 2001
From: jfnavarro <jc.fernandez.navarro@gmail.com>
Date: Thu, 28 Jan 2021 16:13:18 +0100
Subject: [PATCH] Add all the effects for each mutation in merge_results

---
 merge_results.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/merge_results.py b/merge_results.py
index 2da3b26..46e8a45 100644
--- a/merge_results.py
+++ b/merge_results.py
@@ -184,7 +184,7 @@ def main(dna_variants,
                         gene_locus.append("{}:-".format(name))
             else:
                 gene_locus = ["-"]
-            effect = '{}_{}'.format(epitope.func, gene)
+            effect = ';'.join(['{}_{}_{}'.format(e.func, e.gene, e.transcript) for e in epitopes])
             to_write = '\t'.join(str(x) for x in [key, dbsnp, gnomad, cosmic,
                                                   ';'.join(dna_name_pass), num_dna_pass,
                                                   ';'.join(dna_name_fail), num_dna_fail,