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DESCRIPTION
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DESCRIPTION
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Package: PLNmodels
Type: Package
Title: Poisson Lognormal Models
Version: 0.5.8001
Authors@R: c(
person("Julien", "Chiquet", role = c("aut", "cre"), email = "[email protected]",
comment = c(ORCID = "0000-0002-3629-3429")),
person("Mahendra", "Mariadassou", role = "aut", email = "[email protected]"),
person("Stéphane", "Robin", role ="aut", email = "stephane.robininra.fr")
)
Maintainer: Julien Chiquet <[email protected]>
Description: The Poisson-lognormal model and variants can be used for
a variety of multivariate problems when count data are at play (including
PCA for count data, discriminant analysis and network inference). This package
implements efficients variational algorithms to fit such models accompanied with a set of
functions for vizualisation and diagnostic.
URL: https://github.com/jchiquet/PLNmodels (dev version)
BugReports: https://github.com/jchiqut/PLNmodels/issues
License: GPL (>= 3)
SystemRequirements: libnlopt: libnlopt-dev (deb) or NLopt-devel (rpm).
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.0
Depends: R (>= 3.4)
Imports:
igraph,
grid,
gridExtra,
dplyr,
tidyr,
reshape2,
ggplot2,
Matrix,
parallel,
R6,
methods,
stats,
glassoFast,
Rcpp,
RcppArmadillo,
corrplot,
MASS,
mclust,
magrittr,
curl (>= 1.0)
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
Collate:
'PLNfit-class.R'
'PLN.R'
'PLNLDA.R'
'PLNLDAfit-class.R'
'PLNPCA.R'
'PLNfamily-class.R'
'PLNPCAfamily-class.R'
'PLNPCAfit-class.R'
'PLNmodels-package.R'
'PLNnetwork.R'
'PLNnetworkfamily-class.R'
'PLNnetworkfit-class.R'
'RcppExports.R'
'plot_utils.R'
'trichoptera.R'
'utils.R'
LinkingTo: Rcpp, RcppArmadillo