diff --git a/NEWS b/NEWS index 78b5cf930..5f30d8878 100644 --- a/NEWS +++ b/NEWS @@ -1,6 +1,30 @@ Noteworthy changes in release a.b ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +Noteworthy changes in release 1.15.1 (7th April 2022) +~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + +* Security fix: Fixed broken error reporting in the sam_cap_mapq() + function, due to a missing hts_log() parameter. Prior to this fix + it was possible to abuse the log message format string by passing + a specially crafted alignment record to this function. (PR#1406) + +* HTSlib now uses libhtscodecs release 1.2.2. This fixes a number + of bugs where invalid compressed data could trigger usage of + uninitialised values. (PR#1416) + +* Fixed excessive memory used by multi-threaded SAM output on + long reads. (Part of PR#1384) + +* Fixed a bug where tabix would misinterpret region specifiers + starting at position 0. It will also now warn if the file + being indexed is supposed to be 1-based but has positions + less than or equal to 0. (PR#1411) + +* The VCF header parser will now issue a warning if it finds an + INFO header with Type=Flag but Number not equal to 0. It will + also ignore the incorrect Number so the flag can be used. (PR#1415) + Noteworthy changes in release 1.15 (21st February 2022) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ diff --git a/bgzip.1 b/bgzip.1 index 90630345c..c2a319156 100644 --- a/bgzip.1 +++ b/bgzip.1 @@ -1,4 +1,4 @@ -.TH bgzip 1 "21 February 2022" "htslib-1.15" "Bioinformatics tools" +.TH bgzip 1 "7 April 2022" "htslib-1.15.1" "Bioinformatics tools" .SH NAME .PP bgzip \- Block compression/decompression utility diff --git a/htsfile.1 b/htsfile.1 index 055ab9af6..37d783a6d 100644 --- a/htsfile.1 +++ b/htsfile.1 @@ -1,4 +1,4 @@ -.TH htsfile 1 "21 February 2022" "htslib-1.15" "Bioinformatics tools" +.TH htsfile 1 "7 April 2022" "htslib-1.15.1" "Bioinformatics tools" .SH NAME htsfile \- identify high-throughput sequencing data files .\" diff --git a/htslib-s3-plugin.7 b/htslib-s3-plugin.7 index 5860ff0f5..279661053 100644 --- a/htslib-s3-plugin.7 +++ b/htslib-s3-plugin.7 @@ -1,4 +1,4 @@ -.TH htslib-s3-plugin 7 "21 February 2022" "htslib-1.15" "Bioinformatics tools" +.TH htslib-s3-plugin 7 "7 April 2022" "htslib-1.15.1" "Bioinformatics tools" .SH NAME s3 plugin \- htslib AWS S3 plugin .\" diff --git a/tabix.1 b/tabix.1 index 27428bd52..2c012442c 100644 --- a/tabix.1 +++ b/tabix.1 @@ -1,4 +1,4 @@ -.TH tabix 1 "21 February 2022" "htslib-1.15" "Bioinformatics tools" +.TH tabix 1 "7 April 2022" "htslib-1.15.1" "Bioinformatics tools" .SH NAME .PP tabix \- Generic indexer for TAB-delimited genome position files diff --git a/version.sh b/version.sh index bbee27fec..6e6eff016 100755 --- a/version.sh +++ b/version.sh @@ -24,7 +24,7 @@ # DEALINGS IN THE SOFTWARE. # Master version, for use in tarballs or non-git source copies -VERSION=1.15 +VERSION=1.15.1 # If we have a git clone, then check against the current tag srcdir=${0%/version.sh}