diff --git a/Manifest.toml b/Manifest.toml index aff2d4838b6..c3d01f688cb 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -133,9 +133,9 @@ version = "1.3.0" [[DataStructures]] deps = ["InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "be680f1ad03c0a03796aa3fda5a2180df7f83b46" +git-tree-sha1 = "edad9434967fdc0a2631a65d902228400642120c" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.17.18" +version = "0.17.19" [[Dates]] deps = ["Printf"] @@ -268,9 +268,9 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[Intervals]] deps = ["Dates", "Printf", "RecipesBase", "TimeZones"] -git-tree-sha1 = "11555ad4a66a93e2268364f2ea11139634f9dda3" +git-tree-sha1 = "cd90cd95f472ba5e95086520a1a9e4d84a8358da" uuid = "d8418881-c3e1-53bb-8760-2df7ec849ed5" -version = "1.2.0" +version = "1.3.2" [[JLD2]] deps = ["CodecZlib", "DataStructures", "FileIO", "Mmap", "Pkg", "Printf", "UUIDs"] @@ -292,9 +292,9 @@ version = "0.3.0" [[LLVM]] deps = ["CEnum", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "0efb86dc7db298459186546bab008f3b53157582" +git-tree-sha1 = "d9c6e1efcaa6c2fcd043da812a62b3e489a109a3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "1.6.0" +version = "1.7.0" [[LazyArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "MatrixFactorizations", "StaticArrays"] @@ -311,9 +311,9 @@ uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" [[Libiconv_jll]] deps = ["Libdl", "Pkg"] -git-tree-sha1 = "a06937d9aa48855f52484c9a77a2670158fa90e2" +git-tree-sha1 = "c9d4035d7481bcdff2babf5a55525a818ef8ed8f" uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.16.0+4" +version = "1.16.0+5" [[LightXML]] deps = ["Libdl", "XML2_jll"] @@ -370,9 +370,9 @@ version = "1.0.2" [[MbedTLS_jll]] deps = ["Libdl", "Pkg"] -git-tree-sha1 = "c83f5a1d038f034ad0549f9ee4d5fac3fb429e33" +git-tree-sha1 = "f85473aeb7a2561a5c58c06c4868971ebe2bcbff" uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.16.0+2" +version = "2.16.6+0" [[MicrosoftMPI_jll]] deps = ["Libdl", "Pkg"] @@ -455,9 +455,9 @@ version = "1.1.1" [[Parsers]] deps = ["Dates", "Test"] -git-tree-sha1 = "eb3e09940c0d7ae01b01d9291ebad7b081c844d3" +git-tree-sha1 = "20ef902ea02f7000756a4bc19f7b9c24867c6211" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "1.0.5" +version = "1.0.6" [[Pkg]] deps = ["Dates", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "UUIDs"] @@ -638,12 +638,12 @@ version = "1.6.0" [[XML2_jll]] deps = ["Libdl", "Libiconv_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "6b2ffe6728bdba991da4fc1aa5980a53db46a23f" +git-tree-sha1 = "432d91f45e950f2f2bda5c0f4e2b938c14493af9" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.9.9+5" +version = "2.9.10+1" [[Zlib_jll]] deps = ["Libdl", "Pkg"] -git-tree-sha1 = "4838361eb3ba796a57457bdc183e1a128639d0ec" +git-tree-sha1 = "622d8b6dc0c7e8029f17127703de9819134d1b71" uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.11+12" +version = "1.2.11+14" diff --git a/Project.toml b/Project.toml index 0995c71c5b1..eb82422a1be 100644 --- a/Project.toml +++ b/Project.toml @@ -61,6 +61,7 @@ Literate = "2.2" MPI = "0.15" NCDatasets = "0.10" OrderedCollections = "1.1" +PackageCompiler = "1.1" RootSolvers = "0.1, 0.2" SpecialFunctions = "0.10" StaticArrays = "0.12" diff --git a/docs/Manifest.toml b/docs/Manifest.toml index 939f91cf267..7fd16f5d577 100644 --- a/docs/Manifest.toml +++ b/docs/Manifest.toml @@ -8,9 +8,9 @@ version = "0.5.0" [[Adapt]] deps = ["LinearAlgebra"] -git-tree-sha1 = "9e31b9f5d3f9b5ec32c1d01fd8c05270bad10dc0" +git-tree-sha1 = "0fac443759fa829ed8066db6cf1077d888bb6573" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "2.0.0" +version = "2.0.2" [[ArgParse]] deps = ["Logging", "TextWrap"] @@ -32,9 +32,9 @@ version = "3.5.0+3" [[ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra"] -git-tree-sha1 = "89182776a99b69964e995cc2f1e37b5fc3476d56" +git-tree-sha1 = "a3254b3780a3544838ca0b7e23b1e9b06eb71bd8" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "0.3.4" +version = "0.3.5" [[Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" @@ -76,9 +76,9 @@ version = "0.1.6" [[CUDA]] deps = ["AbstractFFTs", "Adapt", "BinaryProvider", "CEnum", "DataStructures", "ExprTools", "GPUArrays", "GPUCompiler", "LLVM", "Libdl", "LinearAlgebra", "Logging", "MacroTools", "NNlib", "Pkg", "Printf", "Random", "Reexport", "Requires", "SparseArrays", "Statistics", "TimerOutputs"] -git-tree-sha1 = "6b1fd23fa4a78d0cc816a50d7fadf4f8b50882a4" +git-tree-sha1 = "d658b3881a25b317ea7fb128efbd82b5e63396ad" uuid = "052768ef-5323-5732-b1bb-66c8b64840ba" -version = "1.0.1" +version = "1.0.2" [[Cassette]] git-tree-sha1 = "ff6f5109371926beb67ec3101be17d2c211e497d" @@ -92,17 +92,11 @@ uuid = "324d7699-5711-5eae-9e2f-1d82baa6b597" version = "0.8.1" [[ClimateMachine]] -deps = ["Adapt", "ArgParse", "CLIMAParameters", "Combinatorics", "Coverage", "CUDA", "Dates", "DelimitedFiles", "Dierckx", "Distributions", "DocStringExtensions", "DoubleFloats", "FileIO", "Formatting", "ForwardDiff", "GaussQuadrature", "JLD2", "KernelAbstractions", "LazyArrays", "LinearAlgebra", "Literate", "Logging", "MPI", "NCDatasets", "OrderedCollections", "Pkg", "Printf", "Random", "RootSolvers", "SpecialFunctions", "StaticArrays", "StaticNumbers", "Statistics", "WriteVTK"] +deps = ["Adapt", "ArgParse", "CLIMAParameters", "CUDA", "Combinatorics", "Coverage", "Dates", "DelimitedFiles", "Dierckx", "Distributions", "DocStringExtensions", "DoubleFloats", "FileIO", "Formatting", "ForwardDiff", "GaussQuadrature", "JLD2", "KernelAbstractions", "LazyArrays", "LinearAlgebra", "Literate", "Logging", "MPI", "NCDatasets", "OrderedCollections", "PackageCompiler", "Pkg", "Printf", "Random", "RootSolvers", "SpecialFunctions", "StaticArrays", "StaticNumbers", "Statistics", "WriteVTK"] path = ".." uuid = "777c4786-024f-11e9-21a3-85d5d4106250" version = "0.2.0-DEV" -[[CodeTracking]] -deps = ["InteractiveUtils", "UUIDs"] -git-tree-sha1 = "9c173f62af93cce8af2bd3527d160b6ddd6eaf81" -uuid = "da1fd8a2-8d9e-5ec2-8556-3022fb5608a2" -version = "1.0.0" - [[CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] git-tree-sha1 = "ded953804d019afa9a3f98981d99b33e3db7b6da" @@ -180,12 +174,6 @@ git-tree-sha1 = "328154f6062b0053588295df6bffe22e1436597a" uuid = "c36e975a-824b-4404-a568-ef97ca766997" version = "1.1.0" -[[Cthulhu]] -deps = ["CodeTracking", "InteractiveUtils", "REPL", "UUIDs", "Unicode"] -git-tree-sha1 = "3f4601d6ec0e967a24a9926ea7a981c7fe63e9a9" -uuid = "f68482b8-f384-11e8-15f7-abe071a5a75f" -version = "1.1.2" - [[DataAPI]] git-tree-sha1 = "176e23402d80e7743fc26c19c681bfb11246af32" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" @@ -193,15 +181,15 @@ version = "1.3.0" [[DataFrames]] deps = ["CategoricalArrays", "Compat", "DataAPI", "Future", "InvertedIndices", "IteratorInterfaceExtensions", "Missings", "PooledArrays", "Printf", "REPL", "Reexport", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "02f08ae77249b7f6d4186b081a016fb7454c616f" +git-tree-sha1 = "e516e72bfb40809b7709cda7bfb39e82ec492d68" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "0.21.2" +version = "0.21.3" [[DataStructures]] deps = ["InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "be680f1ad03c0a03796aa3fda5a2180df7f83b46" +git-tree-sha1 = "edad9434967fdc0a2631a65d902228400642120c" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.17.18" +version = "0.17.19" [[DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -258,9 +246,9 @@ version = "0.24.11" [[DocumenterTools]] deps = ["Base64", "DocStringExtensions", "Documenter", "FileWatching", "LibGit2", "Sass"] -git-tree-sha1 = "33e191588e21a110ee5b7d10d9b350e8b0cfac63" +git-tree-sha1 = "6fa30234228d9020cbe31e393e9d183e944845bb" uuid = "35a29f4d-8980-5a13-9543-d66fff28ecb8" -version = "0.1.6" +version = "0.1.7" [[DoubleFloats]] deps = ["GenericSVD", "GenericSchur", "LinearAlgebra", "Polynomials", "Printf", "Quadmath", "Random", "Requires", "SpecialFunctions"] @@ -375,6 +363,12 @@ git-tree-sha1 = "43b4dc5648028be2c6e96201aa3653903bd1af21" uuid = "c145ed77-6b09-5dd9-b285-bf645a82121e" version = "0.4.0" +[[GeometryBasics]] +deps = ["IterTools", "LinearAlgebra", "StaticArrays", "StructArrays", "Tables"] +git-tree-sha1 = "c1a5a41f28a301d1bf7c393671accee56b02d207" +uuid = "5c1252a2-5f33-56bf-86c9-59e7332b4326" +version = "0.2.13" + [[GeometryTypes]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "StaticArrays"] git-tree-sha1 = "34bfa994967e893ab2f17b864eec221b3521ba4d" @@ -399,9 +393,9 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[Intervals]] deps = ["Dates", "Printf", "RecipesBase", "TimeZones"] -git-tree-sha1 = "11555ad4a66a93e2268364f2ea11139634f9dda3" +git-tree-sha1 = "cd90cd95f472ba5e95086520a1a9e4d84a8358da" uuid = "d8418881-c3e1-53bb-8760-2df7ec849ed5" -version = "1.2.0" +version = "1.3.2" [[InvertedIndices]] deps = ["Test"] @@ -409,6 +403,11 @@ git-tree-sha1 = "15732c475062348b0165684ffe28e85ea8396afc" uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" version = "1.0.0" +[[IterTools]] +git-tree-sha1 = "05110a2ab1fc5f932622ffea2a003221f4782c18" +uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" +version = "1.3.0" + [[IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" uuid = "82899510-4779-5014-852e-03e436cf321d" @@ -440,9 +439,9 @@ version = "3.100.0+1" [[LLVM]] deps = ["CEnum", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "72fc0a39d5899091ff2d4cdaa64cb5e4862cf813" +git-tree-sha1 = "d9c6e1efcaa6c2fcd043da812a62b3e489a109a3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "1.5.2" +version = "1.7.0" [[LaTeXStrings]] git-tree-sha1 = "de44b395389b84fd681394d4e8d39ef14e3a2ea8" @@ -451,9 +450,9 @@ version = "1.1.0" [[LazyArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "MatrixFactorizations", "StaticArrays"] -git-tree-sha1 = "58f1186d445ac4aed3571d6eb1a79e3361f66cad" +git-tree-sha1 = "eb02bd7606db9516205b400da8ba01e829ed5f7b" uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "0.16.12" +version = "0.16.13" [[LibGit2]] deps = ["Printf"] @@ -470,9 +469,9 @@ uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" [[Libiconv_jll]] deps = ["Libdl", "Pkg"] -git-tree-sha1 = "18e9398dbdc297d6f31b2a8ba90c3d8d6a244b2f" +git-tree-sha1 = "c9d4035d7481bcdff2babf5a55525a818ef8ed8f" uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.16.0+3" +version = "1.16.0+5" [[LightXML]] deps = ["Libdl", "XML2_jll"] @@ -495,9 +494,9 @@ uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" [[MPI]] deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "Pkg", "Random", "Requires", "Serialization", "Sockets"] -git-tree-sha1 = "0fc37a7feb384b51bd6e841ea6cfc424623aab74" +git-tree-sha1 = "925f4e00b51d7a68ecb88c1b60d3b7aefb8c8fcb" uuid = "da04e1cc-30fd-572f-bb4f-1f8673147195" -version = "0.14.3" +version = "0.15.0" [[MPICH_jll]] deps = ["CompilerSupportLibraries_jll", "Libdl", "Pkg"] @@ -529,9 +528,9 @@ version = "1.0.2" [[MbedTLS_jll]] deps = ["Libdl", "Pkg"] -git-tree-sha1 = "c83f5a1d038f034ad0549f9ee4d5fac3fb429e33" +git-tree-sha1 = "f85473aeb7a2561a5c58c06c4868971ebe2bcbff" uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.16.0+2" +version = "2.16.6+0" [[Measures]] git-tree-sha1 = "e498ddeee6f9fdb4551ce855a46f54dbd900245f" @@ -565,11 +564,17 @@ git-tree-sha1 = "271e4670a6b30ec1e5daf6ba8b30240b7d85f535" uuid = "85f8d34a-cbdd-5861-8df4-14fed0d494ab" version = "0.10.2" +[[NNPACK_jll]] +deps = ["Libdl", "Pkg"] +git-tree-sha1 = "c3d1a616362645754b18e12dbba96ec311b0867f" +uuid = "a6bfbf70-4841-5cb9-aa18-3a8ad3c413ee" +version = "2018.6.22+0" + [[NNlib]] -deps = ["BinaryProvider", "Libdl", "LinearAlgebra", "Requires", "Statistics"] -git-tree-sha1 = "d9f196d911f55aeaff11b11f681b135980783824" +deps = ["Libdl", "LinearAlgebra", "NNPACK_jll", "Pkg", "Requires", "Statistics"] +git-tree-sha1 = "04bae5dcd446ee45d6a3b9e84adca85ee33fb20c" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.6.6" +version = "0.7.0" [[NaNMath]] git-tree-sha1 = "928b8ca9b2791081dc71a51c55347c27c618760f" @@ -596,9 +601,9 @@ version = "4.0.2+2" [[OpenSSL_jll]] deps = ["Libdl", "Pkg"] -git-tree-sha1 = "d120f3b7173eba8b55b7008fa576e46dbd5da536" +git-tree-sha1 = "7aaaded15bf393b5f34c2aad5b765c18d26cb495" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.1+3" +version = "1.1.1+4" [[OpenSpecFun_jll]] deps = ["CompilerSupportLibraries_jll", "Libdl", "Pkg"] @@ -623,11 +628,17 @@ git-tree-sha1 = "2fc6f50ddd959e462f0a2dbc802ddf2a539c6e35" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" version = "0.9.12" +[[PackageCompiler]] +deps = ["Libdl", "Pkg", "UUIDs"] +git-tree-sha1 = "8989a56e4506b7b6a050f2b912e7856742d6998c" +uuid = "9b87118b-4619-50d2-8e1e-99f35a4d4d9d" +version = "1.1.1" + [[Parsers]] deps = ["Dates", "Test"] -git-tree-sha1 = "eb3e09940c0d7ae01b01d9291ebad7b081c844d3" +git-tree-sha1 = "20ef902ea02f7000756a4bc19f7b9c24867c6211" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "1.0.5" +version = "1.0.6" [[Pkg]] deps = ["Dates", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "UUIDs"] @@ -646,10 +657,10 @@ uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" version = "1.0.5" [[Plots]] -deps = ["Base64", "Contour", "Dates", "FFMPEG", "FixedPointNumbers", "GR", "GeometryTypes", "JSON", "LinearAlgebra", "Measures", "NaNMath", "PlotThemes", "PlotUtils", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "Requires", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs"] -git-tree-sha1 = "d1f89d6dcb34c2f725bccbc0a59baf177f707dd9" +deps = ["Base64", "Contour", "Dates", "FFMPEG", "FixedPointNumbers", "GR", "GeometryBasics", "GeometryTypes", "JSON", "LinearAlgebra", "Measures", "NaNMath", "PlotThemes", "PlotUtils", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "Requires", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs"] +git-tree-sha1 = "943b56316b010e37c6872de9f8c6f9ff748b482d" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.4.3" +version = "1.4.4" [[Polynomials]] deps = ["Intervals", "LinearAlgebra", "RecipesBase"] @@ -777,9 +788,9 @@ version = "0.12.3" [[StaticNumbers]] deps = ["Requires"] -git-tree-sha1 = "8fedba0c674686bfa52dba5f68acf916b824f53a" +git-tree-sha1 = "a0df7d5ade3fd0f0e6c93ad63facc05b12c40e6a" uuid = "c5e4b96a-f99f-5557-8ed2-dc63ef9b5131" -version = "0.3.2" +version = "0.3.3" [[Statistics]] deps = ["LinearAlgebra", "SparseArrays"] @@ -797,6 +808,12 @@ git-tree-sha1 = "04a5a8e6ab87966b43f247920eab053fd5fdc925" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" version = "0.9.5" +[[StructArrays]] +deps = ["Adapt", "DataAPI", "Tables"] +git-tree-sha1 = "8099ed9fb90b6e754d6ba8c6ed8670f010eadca0" +uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" +version = "0.4.4" + [[SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" @@ -866,15 +883,15 @@ version = "1.6.0" [[XML2_jll]] deps = ["Libdl", "Libiconv_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "6b2ffe6728bdba991da4fc1aa5980a53db46a23f" +git-tree-sha1 = "432d91f45e950f2f2bda5c0f4e2b938c14493af9" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.9.9+5" +version = "2.9.10+1" [[Zlib_jll]] deps = ["Libdl", "Pkg"] -git-tree-sha1 = "64b39656c75e67f85b4ac2b336c54674a39f599d" +git-tree-sha1 = "622d8b6dc0c7e8029f17127703de9819134d1b71" uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.11+11" +version = "1.2.11+14" [[libass_jll]] deps = ["Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "Libdl", "Pkg", "Zlib_jll"]