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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(.round)
export(AddCustomScore)
export(AddGOGeneList.manual)
export(AddGOScore)
export(AssignGranuleAverageScoresFromGOterm)
export(AutoFindGranuleResolution)
export(CalcClusterAverages_Gruffi)
export(CalcStandDevSkewedDistr)
export(CalcTranscriptomePercentage)
export(CalcTranscriptomePercentageGO)
export(CalculateAndPlotGoTermScores)
export(CalculateMedianClusterSize)
export(CleanDuplicateScorenames)
export(ClearGruffi)
export(ClusterUMAPthresholding)
export(CustomScoreEvaluation)
export(FeaturePlotSaveCustomScore)
export(FeaturePlotSaveGO)
export(FilterStressedCells)
export(FindThresholdsAuto)
export(FindThresholdsShiny)
export(GetAllGOTermNames)
export(GetGOTerms)
export(GetGruffiClusteringName)
export(GrScoreHistogram)
export(GrScoreUMAP)
export(IntersectWithExpressed)
export(ParseGruffiGranuleScoreName)
export(PlotClustSizeDistr)
export(PlotNormAndSkew)
export(ReassignSmallClusters)
export(StressBarplotPerCluster)
export(StressUMAP)
export(UMAP3Dcubes)
importFrom(AnnotationDbi,Term)
importFrom(AnnotationDbi,select)
importFrom(CodeAndRoll2,as.numeric.wNames.character)
importFrom(CodeAndRoll2,grepv)
importFrom(CodeAndRoll2,matrix.fromNames)
importFrom(CodeAndRoll2,sem)
importFrom(CodeAndRoll2,sortbyitsnames)
importFrom(CodeAndRoll2,which_names)
importFrom(MarkdownHelpers,filter_HP)
importFrom(MarkdownHelpers,llprint)
importFrom(MarkdownHelpers,ww.FnP_parser)
importFrom(Matrix,colSums)
importFrom(Seurat,AddModuleScore)
importFrom(Seurat,Cells)
importFrom(Seurat,DefaultAssay)
importFrom(Seurat,FeaturePlot)
importFrom(Seurat,GetAssayData)
importFrom(Seurat,Idents)
importFrom(Seurat,RenameIdents)
importFrom(Seurat,RunTSNE)
importFrom(Seurat,RunUMAP)
importFrom(Seurat.utils,calc.cluster.averages)
importFrom(Seurat.utils,clUMAP)
importFrom(Seurat.utils,isave.RDS)
importFrom(Seurat.utils,multiFeaturePlot.A4)
importFrom(Stringendo,iprint)
importFrom(Stringendo,kollapse)
importFrom(Stringendo,percentage_formatter)
importFrom(Stringendo,ppp)
importFrom(biomaRt,getBM)
importFrom(biomaRt,useEnsembl)
importFrom(cowplot,save_plot)
importFrom(dplyr,group_by_at)
importFrom(dplyr,n)
importFrom(dplyr,select_at)
importFrom(dplyr,summarize)
importFrom(dplyr,tibble)
importFrom(future,nbrOfWorkers)
importFrom(future,plan)
importFrom(ggExpress,qbarplot)
importFrom(ggExpress,qhistogram)
importFrom(ggExpress,qscatter)
importFrom(ggplot2,labs)
importFrom(gtools,mixedsort)
importFrom(htmlwidgets,saveWidget)
importFrom(org.Hs.eg.db,org.Hs.eg.db)
importFrom(raster,modal)
importFrom(rgl,cube3d)
importFrom(rgl,open3d)
importFrom(rgl,rglwidget)
importFrom(rgl,shade3d)
importFrom(rgl,translate3d)
importFrom(rlang,sym)
importFrom(scales,hue_pal)
importFrom(shiny,runApp)
importFrom(shiny,shinyApp)
importFrom(sm,binning)
importFrom(tictoc,tic)
importFrom(tictoc,toc)
importFrom(viridis,cividis)