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Dockerfile
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# Dockerfile for neoag-tools
FROM ubuntu:22.04
LABEL maintainer="Junko Tsuji <[email protected]>"
WORKDIR /root/
RUN apt-get update && \
apt-get upgrade -y && \
apt-get install -y build-essential \
software-properties-common \
libz-dev \
libncurses-dev \
liblzma-dev \
libbz2-dev \
openjdk-8-jdk \
libcurl4-openssl-dev \
python3 \
python3-pip \
wget \
curl \
git \
unzip && \
apt-get -y clean && \
apt-get -y autoclean && \
apt-get -y autoremove
# Clone neoantigen phasing and translation tools
RUN git clone https://github.com/jnktsj/neoag-tools.git && \
mv neoag-tools main && pip3 install -r /root/main/requirements.txt
# Deleting unneeded caches
RUN rm -rf /var/lib/apt/lists/*
# Copy Dockerfile to workdir
COPY Dockerfile /root/