1.15.3 scales selective import, Issue 577

#577

DESCRIPTION

@@ -1,12 +1,12 @@
 Package: phyloseq
-Version: 1.15.2
-Date: 2016-01-25
+Version: 1.15.3
+Date: 2016-03-20
 Title: Handling and analysis of high-throughput microbiome
     census data
 Description: phyloseq provides a set of classes and tools
     to facilitate the import, storage, analysis, and
     graphical display of microbiome census data.
-Maintainer: Paul J. McMurdie <mcmurdie@alumni.stanford.edu>
+Maintainer: Paul J. McMurdie <[email protected]>
 Author: Paul J. McMurdie <[email protected]>,
     Susan Holmes <[email protected]>, with
     contributions from Gregory Jordan and Scott Chamberlain
@@ -26,7 +26,7 @@ Imports:
     multtest (>= 2.16.0),
     plyr (>= 1.8),
     reshape2 (>= 1.2.2),
-    scales (>= 0.2.3),
+    scales (>= 0.3.0),
     vegan (>= 2.0.10),
     Biobase
 Depends:

NAMESPACE

@@ -153,7 +153,6 @@ import(foreach)
 import(ggplot2)
 import(methods)
 import(reshape2)
-import(scales)
 importClassesFrom(Biostrings,AAStringSet)
 importClassesFrom(Biostrings,BStringSet)
 importClassesFrom(Biostrings,DNAStringSet)
@@ -223,6 +222,7 @@ importFrom(plyr,ddply)
 importFrom(plyr,is.discrete)
 importFrom(plyr,ldply)
 importFrom(plyr,llply)
+importFrom(scales,log_trans)
 importFrom(stats,p.adjust)
 importFrom(stats,p.adjust.methods)
 importFrom(vegan,betadiver)

R/plot-methods.R

@@ -2107,7 +2107,7 @@ nodeplotdefault = function(size=2L, hjust=-0.2){
 #' There are many useful examples of phyloseq tree graphics in the
 #' \href{http://joey711.github.io/phyloseq/plot_tree-examples}{phyloseq online tutorials}.
 #'
-#' @import scales
+#' @importFrom scales log_trans
 #' @import ggplot2
 #' @importFrom data.table setkey
 #' @importFrom data.table setkeyv
@@ -2489,7 +2489,7 @@ RadialTheta <- function(pos){
 #' \href{http://joey711.github.io/phyloseq/plot_heatmap-examples}{phyloseq online tutorials}.
 #' 
 #' @importFrom vegan scores
-#' @import scales 
+#' @importFrom scales log_trans
 #' 
 #' @export
 #' @examples