transporter prediction leads to a zerobytes Transporter.tbl result

[Lishijiagg]

for bug reports and errors please report the output of: ./gapseq test
Hi,
First of all thanks for such a excellent work of gapseq.
When I tried to reconstruct a metabolic network from a genome of B.fragilis, the command ./gapseq find-transport bfragilis/GCF_016889925.1_ASM1688992v1_genomic.fna.gz leads to a null Transporter.tbl file. What might be the cause of this problem?

[Lishijiagg]

here is the information of this command:

(base) lishijia@lishijiadeMacBook-Pro gapseq % ./gapseq find-transport /Users/lishijia/gapseq/bbreve/GCF_001025175.1_ASM102517v1_genomic.fna.gz
Nucleotide fasta detected.
sed: 1: "fasta_header": invalid command code f
sed: 1: "fasta_header": invalid command code f
grep: invalid option -- P
usage: grep [-abcdDEFGHhIiJLlMmnOopqRSsUVvwXxZz] [-A num] [-B num] [-C[num]]
[-e pattern] [-f file] [--binary-files=value] [--color=when]
[--context[=num]] [--directories=action] [--label] [--line-buffered]
[--null] [pattern] [file ...]

Found transporter for substances:

Found transporter without reaction in DB:
Total number of found substance transporter for GCF_001025175.1_ASM102517v1_genomic: 0
stat: illegal option -- c
usage: stat [-FLnq] [-f format | -l | -r | -s | -x] [-t timefmt] [file ...]
sed: 1: "/Users/lishijia/gapseq/ ...": extra characters at the end of l command
sed: 1: "/Users/lishijia/gapseq/ ...": extra characters at the end of l command
Running time: 168 s.

[Waschina]

Could you report the output of ./gapseq test?