diff --git a/README.md b/README.md index 4cb30f0cde..1a9550a90d 100644 --- a/README.md +++ b/README.md @@ -6,9 +6,11 @@ This is the main repository of the `spfluo-app`. `spfluo-app` is built on top of a fork [Scipion](https://scipion.i2pc.es/), so that it runs on Windows. -nvidia gpu compatibility: https://docs.nvidia.com/deploy/cuda-compatibility/#cuda-11-and-later-defaults-to-minor-version-compatibility +## Install -## Run +Go to `spfluo-app` [installation page](https://spfluo.icube.unistra.fr/en/usage/installation.html) and follow the instructions. + +## Install for developement Run with uv: ```sh diff --git a/packages/napari-bbox/pyproject.toml b/packages/napari-bbox/pyproject.toml index fe44ba75d1..2facdbe341 100644 --- a/packages/napari-bbox/pyproject.toml +++ b/packages/napari-bbox/pyproject.toml @@ -41,16 +41,6 @@ dependencies = [ "Source Code" = "https://github.com/bauerdavid/napari-bbox" "User Support" = "https://github.com/bauerdavid/napari-bbox/issues" -[project.optional-dependencies] -testing = [ - "tox", - "pytest", - "pytest-cov", - "pytest-qt", - "napari", - "pyqt5", -] - [tool.setuptools] package-dir = {"" = "src"} include-package-data = true @@ -70,3 +60,13 @@ line-length = 79 [tool.isort] profile = "black" line_length = 79 + +[tool.uv] +dev-dependencies = [ + "tox", + "pytest", + "pytest-cov", + "pytest-qt", + "napari", + "pyqt5", +] \ No newline at end of file diff --git a/packages/napari-spfluo/pyproject.toml b/packages/napari-spfluo/pyproject.toml index 95baccc2fc..8a1bbf25ff 100644 --- a/packages/napari-spfluo/pyproject.toml +++ b/packages/napari-spfluo/pyproject.toml @@ -35,15 +35,6 @@ dependencies = [ "spfluo[ab-initio-reconstruction]", ] -[project.optional-dependencies] -testing = [ - "napari", - "pyqt5", - "pytest", - "pytest-cov", - "pytest-qt", -] - [project.entry-points."napari.manifest"] napari-spfluo = "napari_spfluo:napari.yaml" @@ -58,5 +49,14 @@ Homepage = "https://github.com/jplumail/napari-spfluo" line-length = 79 target-version = ['py39', 'py310', 'py311'] +[tool.uv] +dev-dependencies = [ + "napari", + "pyqt5", + "pytest", + "pytest-cov", + "pytest-qt", +] + [tool.uv.sources] -spfluo = {path = "../spfluo"} \ No newline at end of file +spfluo = {workspace = true} \ No newline at end of file diff --git a/packages/scipion-app/pyproject.toml b/packages/scipion-app/pyproject.toml index bfa34eb911..f1979d1cea 100644 --- a/packages/scipion-app/pyproject.toml +++ b/packages/scipion-app/pyproject.toml @@ -40,4 +40,4 @@ guiplugin = "scipion.guiplugin" "scipion" = ["templates/*.template", "templates/*.json"] [tool.uv.sources] -scipion-fluo = {path = "../scipion-fluo"} \ No newline at end of file +scipion-fluo = {workspace = true} \ No newline at end of file diff --git a/packages/scipion-fluo-singleparticle/pyproject.toml b/packages/scipion-fluo-singleparticle/pyproject.toml index d15fdaa32c..2a38e4f80b 100644 --- a/packages/scipion-fluo-singleparticle/pyproject.toml +++ b/packages/scipion-fluo-singleparticle/pyproject.toml @@ -27,7 +27,7 @@ Repository = "https://github.com/jplumail/scipion-fluo-singleparticle" singleparticle = "singleparticle" [tool.uv.sources] -scipion-pyworkflow = {path="../scipion-pyworkflow"} -scipion-fluo = {path="../scipion-fluo"} -spfluo = {path="../spfluo"} -napari-spfluo = {path="../napari-spfluo"} \ No newline at end of file +scipion-pyworkflow = {workspace=true} +scipion-fluo = {workspace=true} +spfluo = {workspace=true} +napari-spfluo = {workspace=true} \ No newline at end of file diff --git a/packages/scipion-fluo/pyproject.toml b/packages/scipion-fluo/pyproject.toml index 3884de3d5e..ec39937cee 100644 --- a/packages/scipion-fluo/pyproject.toml +++ b/packages/scipion-fluo/pyproject.toml @@ -35,4 +35,4 @@ scipion-fluo = "pwfluo.__main__:main" pwfluo = "pwfluo" [tool.uv.sources] -scipion-pyworkflow = {path = "../scipion-pyworkflow"} \ No newline at end of file +scipion-pyworkflow = {workspace = true} \ No newline at end of file diff --git a/packages/spfluo/pyproject.toml b/packages/spfluo/pyproject.toml index d2b276d914..3f8a9378a3 100644 --- a/packages/spfluo/pyproject.toml +++ b/packages/spfluo/pyproject.toml @@ -32,15 +32,6 @@ classifiers = [ ] [project.optional-dependencies] -dev = [ - "pytest", - "pytest-mock", - "hypothesis", - "pyfigtree", - "scikit-image[data]", - "pytest-qt", -] -array-api-strict = ["array-api-strict"] manual-picking = [ "spfluo[visualisation]" ] @@ -72,5 +63,18 @@ markers = [ "slow: marks tests as slow (deselect with '-m \"not slow\"')", ] +[tool.uv] +dev-dependencies = [ + "pytest", + "pytest-mock", + "hypothesis", + "pyfigtree", + "scikit-image[data]", + "pytest-qt", + "pyqt5", + "array-api-strict", + "spfluo[all]", +] + [tool.uv.sources] -napari-bbox = {path = "../napari-bbox"} \ No newline at end of file +napari-bbox = {workspace = true} \ No newline at end of file diff --git a/pyproject.toml b/pyproject.toml index 207e65349d..7b466fa742 100644 --- a/pyproject.toml +++ 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