oldinstall.sh

#!/bin/bash
# install.sh [--prefix=PREFIX] [--build=BUILDTYPE]    \
#            [--search=SEARCHPATH] [CMake arguments]
#  
#  Build the project with the supplied configurations,
#    or else default values.
#
#   PREFIX gives the location to install.
#   BUILDTYPE is either Debug or Release 
#     (or some other CMake recognizable build type)
#   SEARCHPATH is an optional location to search for headers 
#     and libraries (i.e. SEARCHPATH/include and SEARCHPATH/lib)
#   The default setting for PREFIX is /usr/local unless it is not writable
#     in which case it is ~/.local.
#   The default setting for BUILDTYPE is Release
#   The default setting for SEARCHPATH is to be equal to PREFIX
#   Additional arguments will be passed to CMake. Any paths in these arguments
#   should be absolute.

SRC_ROOT=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
build="$SRC_ROOT/.install/build.sh"

# Parse command line arguments
source $SRC_ROOT/.install/parse.sh

# Build "NetworkLogic"
cd $SRC_ROOT/software/NetworkLogic
$build --prefix=$PREFIX --searchpath=$SEARCHPATH --build=$BUILDTYPE $MASS || exit 1

# Install Logic files
echo Computing logic resource files. This may take several minutes.
mkdir -p $PREFIX/share/DSGRN/logic         || exit 1
./bin/NetworkLogic 6                       || exit 1
mv -f *.dat $PREFIX/share/DSGRN/logic/     || exit 1

# Build "DSGRN"
cd ${SRC_ROOT}
$build --prefix=$PREFIX --searchpath=$SEARCHPATH --build=$BUILDTYPE --test $MASS || exit 1

# Build and Test "Signatures"
cd $SRC_ROOT/software/Signatures
$build --prefix=$PREFIX --searchpath=$SEARCHPATH --build=$BUILDTYPE --test $MASS || exit 1

# Build and Test "DSGRN-Database"
cd $SRC_ROOT/software/DSGRN-Database
$build --prefix=$PREFIX --searchpath=$SEARCHPATH --build=$BUILDTYPE --test $MASS || exit 1

# Build and Test "PatternMatch"
cd $SRC_ROOT/software/PatternMatch
./install.sh --prefix=$PREFIX --searchpath=$SEARCHPATH --build=$BUILDTYPE $MASS || exit 1

# Build and Test "ParameterSampler"
# TODO: problem, requires Mathematics computed databases so this will fail the Travis build
# cd $SRC_ROOT/software/AlgebraicGeometry
# ./install.sh --prefix=$PREFIX --searchpath=$SEARCHPATH --build=$BUILDTYPE $MASS || exit 1