DESCRIPTION

Package: Rariant
Type: Package
Title: Identification and Assessment of Single Nucleotide Variants through Shifts in Non-Consensus Base Call Frequencies
Version: 1.7.1
Author: Julian Gehring, Simon Anders, Bernd Klaus (EMBL Heidelberg)
Maintainer: Julian Gehring <julian.gehring@embl.de>
Imports: methods, S4Vectors (>= 0.9.25), IRanges, GenomeInfoDb, ggbio, ggplot2, exomeCopy, SomaticSignatures, Rsamtools, shiny, VGAM, dplyr, reshape2
Depends: R (>= 3.0.2), GenomicRanges, VariantAnnotation
Suggests: h5vcData, testthat, knitr, optparse, BSgenome.Hsapiens.UCSC.hg19
Description: The 'Rariant' package identifies single nucleotide variants from sequencing data based on the difference of binomially distributed mismatch rates between matched samples.
VignetteBuilder: knitr
Encoding: UTF-8
ByteCompile: TRUE
License: GPL-3
LazyLoad: yes
biocViews: Sequencing, StatisticalMethod, GenomicVariation, SomaticMutation, VariantDetection, Visualization