DESCRIPTION

Package: SomaticSignatures
Type: Package
Title: Somatic Signatures
Version: 2.7.4
Author: Julian Gehring (EMBL Heidelberg)
Maintainer: Julian Gehring <julian.gehring@embl.de>
Description: The SomaticSignatures package identifies mutational signatures of single nucleotide variants (SNVs).  It provides a infrastructure related to the methodology described in Nik-Zainal (2012, Cell), with flexibility in the matrix decomposition algorithms.
URL: http://bioconductor.org/packages/release/bioc/html/SomaticSignatures.html, https://github.com/julian-gehring/SomaticSignatures-release
Imports: S4Vectors, IRanges, GenomeInfoDb, Biostrings, ggplot2, ggbio, reshape2, NMF, pcaMethods, Biobase, methods, proxy
Depends: R (>= 3.1.0), VariantAnnotation, GenomicRanges
Suggests: testthat, knitr, parallel, BSgenome.Hsapiens.1000genomes.hs37d5, SomaticCancerAlterations, ggdendro, fastICA, sva
VignetteBuilder: knitr
ByteCompile: TRUE
License: MIT + file LICENSE
LazyLoad: yes
biocViews: Sequencing, SomaticMutation, Visualization, Clustering, GenomicVariation, StatisticalMethod