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Open MPI Cluster Setup

Requirements

Nodes are connected to the same network with SSH sharing enabled.

  • Installed Open MPI on each node.
  • Set up passwordless SSH access.
  • Configured firewall settings for MPI communication.
  • Written and compiled a simple MPI program. (Same code and path for each node)
  • Executed the MPI program across all nodes.

Install Open MPI and create user in the main node

Tip

Make sure to change the password in the install.sh script to a strong one.

Run the install.sh script to install Open MPI on each node. This script will create a user mpi with password cluster123 and add it to the sudoers group.

It will also install Open MPI to /usr/local and add it to the PATH.

Make the script executable:

chmod +x install.sh

Run the script in the master node:

./install.sh

Use the mpi user.

su mpi

Check if Open MPI is installed:

mpirun --version

Create hosts.txt file in the main node

Tip

Make sure to change the start IP in the create_hosts.sh script to a valid IP address for your network.

Log in as the mpi user:

su mpi

Run the create_hosts.sh script to create the hosts.txt file in the user's home directory.

Make the script executable:

chmod +x create_hosts.sh

Run the script in the main node:

./create_hosts.sh <start_ip> <number_of_hosts>

Install Open MPI and create user in each node

Now repeat the steps in each node. Use the utility script run_on_multiple_hosts.sh to copy and execute a script on multiple hosts via SSH.

Make the script executable:

chmod +x run_on_multiple_hosts.sh

Run the script in the master node, make sure the hosts.txt is in the same directory as the script or provide the full path to the file using the -h option:

./run_on_multiple_hosts.sh -u mpi -s install.sh

Compile the MPI program on each node

Compile the MPI program on the main node:

Make the script executable:

chmod +x compile.sh

Run the script in the main node:

./compile.sh

This script will compile the mpi_test.c file and place the mpi_test executable in the user's home directory.

Now repeat the steps in each node. Use the utility script run_on_multiple_hosts.sh to copy and execute a script on multiple hosts via SSH.

./run_on_multiple_hosts.sh -u mpi -s compile.sh

Run the MPI program across all nodes

With the hosts.txt file in the main node, run the MPI program in the main node:

All nodes must have the mpi_test executable in their home directory in the mpi user.

mpirun -np <number_of_nodes> --hostfile hosts.txt ./mpi_test