diff --git a/.changeset/cool-pigs-deny.md b/.changeset/cool-pigs-deny.md
new file mode 100644
index 000000000..6948a5649
--- /dev/null
+++ b/.changeset/cool-pigs-deny.md
@@ -0,0 +1,5 @@
+---
+'myst-common': patch
+---
+
+Added `options?: PluginOptions` to `TransformSpec` type. Enables passing configuration options to transform plugins.
diff --git a/.changeset/orange-rockets-relate.md b/.changeset/orange-rockets-relate.md
new file mode 100644
index 000000000..7a12ae90b
--- /dev/null
+++ b/.changeset/orange-rockets-relate.md
@@ -0,0 +1,8 @@
+---
+'myst-cli': patch
+---
+
+Integrated transform loading from options with proper plugin utilities.
+
+Added mermaid transform import and configuration
+Integrated mermaid transform into Typst build pipeline.
diff --git a/.changeset/stale-ghosts-drum.md b/.changeset/stale-ghosts-drum.md
new file mode 100644
index 000000000..55a7a71af
--- /dev/null
+++ b/.changeset/stale-ghosts-drum.md
@@ -0,0 +1,5 @@
+---
+'myst-spec-ext': patch
+---
+
+Added `label`, `identifier`, and `html_id` to `Image` type
diff --git a/docs/diagrams.md b/docs/diagrams.md
index dddb3c0cf..5a3cfa530 100644
--- a/docs/diagrams.md
+++ b/docs/diagrams.md
@@ -24,3 +24,32 @@ flowchart LR
 :::{note}
 Both GitHub and JupyterLab ([#101](https://github.com/jupyter/enhancement-proposals/pull/101)) support the translation of a code-block ` ```mermaid ` to a mermaid diagram directly, this can also be used by default in MyST.
 :::
+
+## Rendering for Static Exports
+
+MyST supports static rendering of Mermaid diagrams for static export formats (PDF, Word, LaTeX, Typst). This feature converts Mermaid syntax to base64-encoded SVG or PNG images during the build process, ensuring consistent rendering across all static output formats.
+
+:::{important} Prerequisites
+To use static Mermaid rendering, you need the Mermaid CLI installed:
+
+```bash
+npm install -g @mermaid-js/mermaid-cli
+```
+
+:::
+
+:::{note .dropdown} For CI Environments
+
+The Mermaid CLI uses Puppeteer which may require special configuration in CI environments. MyST automatically handles this by detecting the `CI` environment variable or you can manually control it:
+
+```bash
+# Automatic detection (recommended for CI)
+CI=true npm run build
+
+# Manual control
+MERMAID_NO_SANDBOX=true npm run build
+```
+
+This automatically creates a Puppeteer configuration file with `--no-sandbox` flag to resolve sandbox issues in Linux CI environments.
+
+:::
diff --git a/package-lock.json b/package-lock.json
index b47aae3b9..477fb26a6 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -41,7 +41,6 @@
       "version": "7.23.5",
       "resolved": "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.23.5.tgz",
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-      "dev": true,
       "dependencies": {
         "@babel/highlight": "^7.23.4",
         "chalk": "^2.4.2"
@@ -54,7 +53,6 @@
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-      "dev": true,
       "engines": {
         "node": ">=6.9.0"
       }
@@ -63,7 +61,6 @@
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-      "dev": true,
       "dependencies": {
         "@babel/helper-validator-identifier": "^7.22.20",
         "chalk": "^2.4.2",
@@ -97,6 +94,12 @@
         "node": ">=6.9.0"
       }
     },
+    "node_modules/@braintree/sanitize-url": {
+      "version": "6.0.4",
+      "resolved": "https://registry.npmjs.org/@braintree/sanitize-url/-/sanitize-url-6.0.4.tgz",
+      "integrity": "sha512-s3jaWicZd0pkP0jf5ysyHUI/RE7MHos6qlToFcGWXVp+ykHOy77OUMrfbgJ9it2C5bow7OIQwYYaHjk9XlBQ2A==",
+      "license": "MIT"
+    },
     "node_modules/@changesets/apply-release-plan": {
       "version": "6.1.4",
       "resolved": "https://registry.npmjs.org/@changesets/apply-release-plan/-/apply-release-plan-6.1.4.tgz",
@@ -1254,6 +1257,36 @@
         "node": ">=6 <7 || >=8"
       }
     },
+    "node_modules/@mermaid-js/mermaid-cli": {
+      "version": "10.9.1",
+      "resolved": "https://registry.npmjs.org/@mermaid-js/mermaid-cli/-/mermaid-cli-10.9.1.tgz",
+      "integrity": "sha512-ajpGUKmB5YbRRzrFR+0dbykF9mTvce4FpHWGYPYTry8ZsOgP6h7SUnojyCJDGgbReCnArODCM8L212qIcxshIw==",
+      "license": "MIT",
+      "dependencies": {
+        "chalk": "^5.0.1",
+        "commander": "^10.0.0",
+        "mermaid": "^10.8.0",
+        "puppeteer": "^19.0.0"
+      },
+      "bin": {
+        "mmdc": "src/cli.js"
+      },
+      "engines": {
+        "node": "^14.13 || >=16.0"
+      }
+    },
+    "node_modules/@mermaid-js/mermaid-cli/node_modules/chalk": {
+      "version": "5.4.1",
+      "resolved": "https://registry.npmjs.org/chalk/-/chalk-5.4.1.tgz",
+      "integrity": "sha512-zgVZuo2WcZgfUEmsn6eO3kINexW8RAE4maiQ8QNs8CtpPCSyMiYsULR3HQYkm3w8FIA3SberyMJMSldGsW+U3w==",
+      "license": "MIT",
+      "engines": {
+        "node": "^12.17.0 || ^14.13 || >=16.0.0"
+      },
+      "funding": {
+        "url": "https://github.com/chalk/chalk?sponsor=1"
+      }
+    },
     "node_modules/@next/eslint-plugin-next": {
       "version": "13.4.10",
       "resolved": "https://registry.npmjs.org/@next/eslint-plugin-next/-/eslint-plugin-next-13.4.10.tgz",
@@ -1384,6 +1417,152 @@
         "node": ">=12"
       }
     },
+    "node_modules/@puppeteer/browsers": {
+      "version": "0.5.0",
+      "resolved": "https://registry.npmjs.org/@puppeteer/browsers/-/browsers-0.5.0.tgz",
+      "integrity": "sha512-Uw6oB7VvmPRLE4iKsjuOh8zgDabhNX67dzo8U/BB0f9527qx+4eeUs+korU98OhG5C4ubg7ufBgVi63XYwS6TQ==",
+      "license": "Apache-2.0",
+      "dependencies": {
+        "debug": "4.3.4",
+        "extract-zip": "2.0.1",
+        "https-proxy-agent": "5.0.1",
+        "progress": "2.0.3",
+        "proxy-from-env": "1.1.0",
+        "tar-fs": "2.1.1",
+        "unbzip2-stream": "1.4.3",
+        "yargs": "17.7.1"
+      },
+      "bin": {
+        "browsers": "lib/cjs/main-cli.js"
+      },
+      "engines": {
+        "node": ">=14.1.0"
+      },
+      "peerDependencies": {
+        "typescript": ">= 4.7.4"
+      },
+      "peerDependenciesMeta": {
+        "typescript": {
+          "optional": true
+        }
+      }
+    },
+    "node_modules/@puppeteer/browsers/node_modules/agent-base": {
+      "version": "6.0.2",
+      "resolved": "https://registry.npmjs.org/agent-base/-/agent-base-6.0.2.tgz",
+      "integrity": "sha512-RZNwNclF7+MS/8bDg70amg32dyeZGZxiDuQmZxKLAlQjr3jGyLx+4Kkk58UO7D2QdgFIQCovuSuZESne6RG6XQ==",
+      "license": "MIT",
+      "dependencies": {
+        "debug": "4"
+      },
+      "engines": {
+        "node": ">= 6.0.0"
+      }
+    },
+    "node_modules/@puppeteer/browsers/node_modules/ansi-regex": {
+      "version": "5.0.1",
+      "resolved": "https://registry.npmjs.org/ansi-regex/-/ansi-regex-5.0.1.tgz",
+      "integrity": "sha512-quJQXlTSUGL2LH9SUXo8VwsY4soanhgo6LNSm84E1LBcE8s3O0wpdiRzyR9z/ZZJMlMWv37qOOb9pdJlMUEKFQ==",
+      "license": "MIT",
+      "engines": {
+        "node": ">=8"
+      }
+    },
+    "node_modules/@puppeteer/browsers/node_modules/debug": {
+      "version": "4.3.4",
+      "resolved": "https://registry.npmjs.org/debug/-/debug-4.3.4.tgz",
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+      "license": "MIT",
+      "dependencies": {
+        "ms": "2.1.2"
+      },
+      "engines": {
+        "node": ">=6.0"
+      },
+      "peerDependenciesMeta": {
+        "supports-color": {
+          "optional": true
+        }
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+      "license": "MIT"
+    },
+    "node_modules/@puppeteer/browsers/node_modules/https-proxy-agent": {
+      "version": "5.0.1",
+      "resolved": "https://registry.npmjs.org/https-proxy-agent/-/https-proxy-agent-5.0.1.tgz",
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+      "license": "MIT",
+      "dependencies": {
+        "agent-base": "6",
+        "debug": "4"
+      },
+      "engines": {
+        "node": ">= 6"
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+      "license": "MIT"
+    },
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+      "license": "MIT",
+      "dependencies": {
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+        "is-fullwidth-code-point": "^3.0.0",
+        "strip-ansi": "^6.0.1"
+      },
+      "engines": {
+        "node": ">=8"
+      }
+    },
+    "node_modules/@puppeteer/browsers/node_modules/strip-ansi": {
+      "version": "6.0.1",
+      "resolved": "https://registry.npmjs.org/strip-ansi/-/strip-ansi-6.0.1.tgz",
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+      "license": "MIT",
+      "dependencies": {
+        "ansi-regex": "^5.0.1"
+      },
+      "engines": {
+        "node": ">=8"
+      }
+    },
+    "node_modules/@puppeteer/browsers/node_modules/yargs": {
+      "version": "17.7.1",
+      "resolved": "https://registry.npmjs.org/yargs/-/yargs-17.7.1.tgz",
+      "integrity": "sha512-cwiTb08Xuv5fqF4AovYacTFNxk62th7LKJ6BL9IGUpTJrWoU7/7WdQGTP2SjKf1dUNBGzDd28p/Yfs/GI6JrLw==",
+      "license": "MIT",
+      "dependencies": {
+        "cliui": "^8.0.1",
+        "escalade": "^3.1.1",
+        "get-caller-file": "^2.0.5",
+        "require-directory": "^2.1.1",
+        "string-width": "^4.2.3",
+        "y18n": "^5.0.5",
+        "yargs-parser": "^21.1.1"
+      },
+      "engines": {
+        "node": ">=12"
+      }
+    },
+    "node_modules/@puppeteer/browsers/node_modules/yargs-parser": {
+      "version": "21.1.1",
+      "resolved": "https://registry.npmjs.org/yargs-parser/-/yargs-parser-21.1.1.tgz",
+      "integrity": "sha512-tVpsJW7DdjecAiFpbIB1e3qxIQsE6NoPc5/eTdrbbIC4h0LVsWhnoa3g+m2HclBIujHzsxZ4VJVA+GUuc2/LBw==",
+      "license": "ISC",
+      "engines": {
+        "node": ">=12"
+      }
+    },
     "node_modules/@reduxjs/toolkit": {
       "version": "2.1.0",
       "resolved": "https://registry.npmjs.org/@reduxjs/toolkit/-/toolkit-2.1.0.tgz",
@@ -1745,6 +1924,27 @@
         "@types/node": "*"
       }
     },
+    "node_modules/@types/d3-scale": {
+      "version": "4.0.9",
+      "resolved": "https://registry.npmjs.org/@types/d3-scale/-/d3-scale-4.0.9.tgz",
+      "integrity": "sha512-dLmtwB8zkAeO/juAMfnV+sItKjlsw2lKdZVVy6LRr0cBmegxSABiLEpGVmSJJ8O08i4+sGR6qQtb6WtuwJdvVw==",
+      "license": "MIT",
+      "dependencies": {
+        "@types/d3-time": "*"
+      }
+    },
+    "node_modules/@types/d3-scale-chromatic": {
+      "version": "3.1.0",
+      "resolved": "https://registry.npmjs.org/@types/d3-scale-chromatic/-/d3-scale-chromatic-3.1.0.tgz",
+      "integrity": "sha512-iWMJgwkK7yTRmWqRB5plb1kadXyQ5Sj8V/zYlFGMUBbIPKQScw+Dku9cAAMgJG+z5GYDoMjWGLVOvjghDEFnKQ==",
+      "license": "MIT"
+    },
+    "node_modules/@types/d3-time": {
+      "version": "3.0.4",
+      "resolved": "https://registry.npmjs.org/@types/d3-time/-/d3-time-3.0.4.tgz",
+      "integrity": "sha512-yuzZug1nkAAaBlBBikKZTgzCeA+k1uy4ZFwWANOfKw5z5LRhV0gNA7gNkKm7HoK+HRN0wX3EkxGk0fpbWhmB7g==",
+      "license": "MIT"
+    },
     "node_modules/@types/debug": {
       "version": "4.1.8",
       "resolved": "https://registry.npmjs.org/@types/debug/-/debug-4.1.8.tgz",
@@ -2051,6 +2251,16 @@
         "@types/node": "*"
       }
     },
+    "node_modules/@types/yauzl": {
+      "version": "2.10.3",
+      "resolved": "https://registry.npmjs.org/@types/yauzl/-/yauzl-2.10.3.tgz",
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+      "license": "MIT",
+      "optional": true,
+      "dependencies": {
+        "@types/node": "*"
+      }
+    },
     "node_modules/@typescript-eslint/eslint-plugin": {
       "version": "6.0.0",
       "resolved": "https://registry.npmjs.org/@typescript-eslint/eslint-plugin/-/eslint-plugin-6.0.0.tgz",
@@ -2849,7 +3059,6 @@
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-      "dev": true,
       "dependencies": {
         "color-convert": "^1.9.0"
       },
@@ -3295,6 +3504,15 @@
         "ieee754": "^1.1.13"
       }
     },
+    "node_modules/buffer-crc32": {
+      "version": "0.2.13",
+      "resolved": "https://registry.npmjs.org/buffer-crc32/-/buffer-crc32-0.2.13.tgz",
+      "integrity": "sha512-VO9Ht/+p3SN7SKWqcrgEzjGbRSJYTx+Q1pTQC0wrWqHx0vpJraQ6GtHx8tvcg1rlK1byhU5gccxgOgj7B0TDkQ==",
+      "license": "MIT",
+      "engines": {
+        "node": "*"
+      }
+    },
     "node_modules/buffer-image-size": {
       "version": "0.6.4",
       "resolved": "https://registry.npmjs.org/buffer-image-size/-/buffer-image-size-0.6.4.tgz",
@@ -3387,7 +3605,6 @@
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-      "dev": true,
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@@ -3491,7 +3708,6 @@
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-      "dev": true,
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         "escape-string-regexp": "^1.0.5",
@@ -3657,6 +3873,24 @@
         "fsevents": "~2.3.2"
       }
     },
+    "node_modules/chownr": {
+      "version": "1.1.4",
+      "resolved": "https://registry.npmjs.org/chownr/-/chownr-1.1.4.tgz",
+      "integrity": "sha512-jJ0bqzaylmJtVnNgzTeSOs8DPavpbYgEr/b0YL8/2GO3xJEhInFmhKMUnEJQjZumK7KXGFhUy89PrsJWlakBVg==",
+      "license": "ISC"
+    },
+    "node_modules/chromium-bidi": {
+      "version": "0.4.7",
+      "resolved": "https://registry.npmjs.org/chromium-bidi/-/chromium-bidi-0.4.7.tgz",
+      "integrity": "sha512-6+mJuFXwTMU6I3vYLs6IL8A1DyQTPjCfIL971X0aMPVGRbGnNfl6i6Cl0NMbxi2bRYLGESt9T2ZIMRM5PAEcIQ==",
+      "license": "Apache-2.0",
+      "dependencies": {
+        "mitt": "3.0.0"
+      },
+      "peerDependencies": {
+        "devtools-protocol": "*"
+      }
+    },
     "node_modules/ci-info": {
       "version": "3.8.0",
       "resolved": "https://registry.npmjs.org/ci-info/-/ci-info-3.8.0.tgz",
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@@ -3822,20 +4052,17 @@
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+      }
+    },
+    "node_modules/puppeteer/node_modules/https-proxy-agent": {
+      "version": "5.0.1",
+      "resolved": "https://registry.npmjs.org/https-proxy-agent/-/https-proxy-agent-5.0.1.tgz",
+      "integrity": "sha512-dFcAjpTQFgoLMzC2VwU+C/CbS7uRL0lWmxDITmqm7C+7F0Odmj6s9l6alZc6AELXhrnggM2CeWSXHGOdX2YtwA==",
+      "license": "MIT",
+      "dependencies": {
+        "agent-base": "6",
+        "debug": "4"
+      },
+      "engines": {
+        "node": ">= 6"
+      }
+    },
     "node_modules/qs": {
       "version": "6.13.0",
       "resolved": "https://registry.npmjs.org/qs/-/qs-6.13.0.tgz",
@@ -12508,7 +13654,6 @@
       "version": "2.1.1",
       "resolved": "https://registry.npmjs.org/require-directory/-/require-directory-2.1.1.tgz",
       "integrity": "sha512-fGxEI7+wsG9xrvdjsrlmL22OMTTiHRwAMroiEeMgq8gzoLC/PQr7RsRDSTLUg/bZAZtF+TVIkHc6/4RIKrui+Q==",
-      "dev": true,
       "engines": {
         "node": ">=0.10.0"
       }
@@ -12679,6 +13824,12 @@
         "url": "https://github.com/sponsors/isaacs"
       }
     },
+    "node_modules/robust-predicates": {
+      "version": "3.0.2",
+      "resolved": "https://registry.npmjs.org/robust-predicates/-/robust-predicates-3.0.2.tgz",
+      "integrity": "sha512-IXgzBWvWQwE6PrDI05OvmXUIruQTcoMDzRsOd5CDvHCVLcLHMTSYvOK5Cm46kWqlV3yAbuSpBZdJ5oP5OUoStg==",
+      "license": "Unlicense"
+    },
     "node_modules/rollup": {
       "version": "4.24.0",
       "resolved": "https://registry.npmjs.org/rollup/-/rollup-4.24.0.tgz",
@@ -12831,6 +13982,12 @@
         "queue-microtask": "^1.2.2"
       }
     },
+    "node_modules/rw": {
+      "version": "1.3.3",
+      "resolved": "https://registry.npmjs.org/rw/-/rw-1.3.3.tgz",
+      "integrity": "sha512-PdhdWy89SiZogBLaw42zdeqtRJ//zFd2PgQavcICDUgJT5oW10QCRKbJ6bg4r0/UY2M6BWd5tkxuGFRvCkgfHQ==",
+      "license": "BSD-3-Clause"
+    },
     "node_modules/rxjs": {
       "version": "7.8.1",
       "resolved": "https://registry.npmjs.org/rxjs/-/rxjs-7.8.1.tgz",
@@ -13788,6 +14945,12 @@
         "url": "https://github.com/sponsors/sindresorhus"
       }
     },
+    "node_modules/stylis": {
+      "version": "4.3.6",
+      "resolved": "https://registry.npmjs.org/stylis/-/stylis-4.3.6.tgz",
+      "integrity": "sha512-yQ3rwFWRfwNUY7H5vpU0wfdkNSnvnJinhF9830Swlaxl03zsOjCfmX0ugac+3LtK0lYSgwL/KXc8oYL3mG4YFQ==",
+      "license": "MIT"
+    },
     "node_modules/stylus-lookup": {
       "version": "3.0.2",
       "resolved": "https://registry.npmjs.org/stylus-lookup/-/stylus-lookup-3.0.2.tgz",
@@ -13814,7 +14977,6 @@
       "version": "5.5.0",
       "resolved": "https://registry.npmjs.org/supports-color/-/supports-color-5.5.0.tgz",
       "integrity": "sha512-QjVjwdXIt408MIiAqCX4oUKsgU2EqAGzs2Ppkm4aQYbjm+ZEWEcW4SfFNTr4uMNZma0ey4f5lgLrkB0aX0QMow==",
-      "dev": true,
       "dependencies": {
         "has-flag": "^3.0.0"
       },
@@ -13890,6 +15052,48 @@
         "node": ">=6"
       }
     },
+    "node_modules/tar-fs": {
+      "version": "2.1.1",
+      "resolved": "https://registry.npmjs.org/tar-fs/-/tar-fs-2.1.1.tgz",
+      "integrity": "sha512-V0r2Y9scmbDRLCNex/+hYzvp/zyYjvFbHPNgVTKfQvVrb6guiE/fxP+XblDNR011utopbkex2nM4dHNV6GDsng==",
+      "license": "MIT",
+      "dependencies": {
+        "chownr": "^1.1.1",
+        "mkdirp-classic": "^0.5.2",
+        "pump": "^3.0.0",
+        "tar-stream": "^2.1.4"
+      }
+    },
+    "node_modules/tar-stream": {
+      "version": "2.2.0",
+      "resolved": "https://registry.npmjs.org/tar-stream/-/tar-stream-2.2.0.tgz",
+      "integrity": "sha512-ujeqbceABgwMZxEJnk2HDY2DlnUZ+9oEcb1KzTVfYHio0UE6dG71n60d8D2I4qNvleWrrXpmjpt7vZeF1LnMZQ==",
+      "license": "MIT",
+      "dependencies": {
+        "bl": "^4.0.3",
+        "end-of-stream": "^1.4.1",
+        "fs-constants": "^1.0.0",
+        "inherits": "^2.0.3",
+        "readable-stream": "^3.1.1"
+      },
+      "engines": {
+        "node": ">=6"
+      }
+    },
+    "node_modules/tar-stream/node_modules/readable-stream": {
+      "version": "3.6.2",
+      "resolved": "https://registry.npmjs.org/readable-stream/-/readable-stream-3.6.2.tgz",
+      "integrity": "sha512-9u/sniCrY3D5WdsERHzHE4G2YCXqoG5FTHUiCC4SIbr6XcLZBY05ya9EKjYek9O5xOAwjGq+1JdGBAS7Q9ScoA==",
+      "license": "MIT",
+      "dependencies": {
+        "inherits": "^2.0.3",
+        "string_decoder": "^1.1.1",
+        "util-deprecate": "^1.0.1"
+      },
+      "engines": {
+        "node": ">= 6"
+      }
+    },
     "node_modules/term-size": {
       "version": "2.2.1",
       "resolved": "https://registry.npmjs.org/term-size/-/term-size-2.2.1.tgz",
@@ -13923,6 +15127,12 @@
       "integrity": "sha512-N+8UisAXDGk8PFXP4HAzVR9nbfmVJ3zYLAWiTIoqC5v5isinhr+r5uaO8+7r3BMfuNIufIsA7RdpVgacC2cSpw==",
       "dev": true
     },
+    "node_modules/through": {
+      "version": "2.3.8",
+      "resolved": "https://registry.npmjs.org/through/-/through-2.3.8.tgz",
+      "integrity": "sha512-w89qg7PI8wAdvX60bMDP+bFoD5Dvhm9oLheFp5O4a2QF0cSBGsBX4qZmadPMvVqlLJBBci+WqGGOAPvcDeNSVg==",
+      "license": "MIT"
+    },
     "node_modules/tinybench": {
       "version": "2.9.0",
       "resolved": "https://registry.npmjs.org/tinybench/-/tinybench-2.9.0.tgz",
@@ -14078,6 +15288,15 @@
         "typescript": ">=4.2.0"
       }
     },
+    "node_modules/ts-dedent": {
+      "version": "2.2.0",
+      "resolved": "https://registry.npmjs.org/ts-dedent/-/ts-dedent-2.2.0.tgz",
+      "integrity": "sha512-q5W7tVM71e2xjHZTlgfTDoPF/SmqKG5hddq9SzR49CH2hayqRKJtQ4mtRlSxKaJlR/+9rEM+mnBHf7I2/BQcpQ==",
+      "license": "MIT",
+      "engines": {
+        "node": ">=6.10"
+      }
+    },
     "node_modules/ts-graphviz": {
       "version": "1.8.2",
       "resolved": "https://registry.npmjs.org/ts-graphviz/-/ts-graphviz-1.8.2.tgz",
@@ -14429,7 +15648,7 @@
       "version": "5.6.2",
       "resolved": "https://registry.npmjs.org/typescript/-/typescript-5.6.2.tgz",
       "integrity": "sha512-NW8ByodCSNCwZeghjN3o+JX5OFH0Ojg6sadjEKY4huZ52TqbJTJnDo5+Tw98lSy63NZvi4n+ez5m2u5d4PkZyw==",
-      "dev": true,
+      "devOptional": true,
       "license": "Apache-2.0",
       "bin": {
         "tsc": "bin/tsc",
@@ -14459,6 +15678,16 @@
         "url": "https://github.com/sponsors/ljharb"
       }
     },
+    "node_modules/unbzip2-stream": {
+      "version": "1.4.3",
+      "resolved": "https://registry.npmjs.org/unbzip2-stream/-/unbzip2-stream-1.4.3.tgz",
+      "integrity": "sha512-mlExGW4w71ebDJviH16lQLtZS32VKqsSfk80GCfUlwT/4/hNRFsoscrF/c++9xinkMzECL1uL9DDwXqFWkruPg==",
+      "license": "MIT",
+      "dependencies": {
+        "buffer": "^5.2.1",
+        "through": "^2.3.8"
+      }
+    },
     "node_modules/unified": {
       "version": "10.1.2",
       "resolved": "https://registry.npmjs.org/unified/-/unified-10.1.2.tgz",
@@ -15478,6 +16707,12 @@
         "node": ">= 8"
       }
     },
+    "node_modules/web-worker": {
+      "version": "1.5.0",
+      "resolved": "https://registry.npmjs.org/web-worker/-/web-worker-1.5.0.tgz",
+      "integrity": "sha512-RiMReJrTAiA+mBjGONMnjVDP2u3p9R1vkcGz6gDIrOMT3oGuYwX2WRMYI9ipkphSuE5XKEhydbhNEJh4NY9mlw==",
+      "license": "Apache-2.0"
+    },
     "node_modules/webidl-conversions": {
       "version": "3.0.1",
       "resolved": "https://registry.npmjs.org/webidl-conversions/-/webidl-conversions-3.0.1.tgz",
@@ -15706,8 +16941,7 @@
     "node_modules/wrappy": {
       "version": "1.0.2",
       "resolved": "https://registry.npmjs.org/wrappy/-/wrappy-1.0.2.tgz",
-      "integrity": "sha512-l4Sp/DRseor9wL6EvV2+TuQn63dMkPjZ/sp9XkghTEbV9KlPS1xUsZ3u7/IQO4wxtcFB4bgpQPRcR3QCvezPcQ==",
-      "dev": true
+      "integrity": "sha512-l4Sp/DRseor9wL6EvV2+TuQn63dMkPjZ/sp9XkghTEbV9KlPS1xUsZ3u7/IQO4wxtcFB4bgpQPRcR3QCvezPcQ=="
     },
     "node_modules/ws": {
       "version": "8.18.0",
@@ -15769,7 +17003,6 @@
       "version": "5.0.8",
       "resolved": "https://registry.npmjs.org/y18n/-/y18n-5.0.8.tgz",
       "integrity": "sha512-0pfFzegeDWJHJIAmTLRP2DwHjdF5s7jo9tuztdQxAhINCdvS+3nGINqPd00AphqJR/0LhANUS6/+7SCb98YOfA==",
-      "dev": true,
       "engines": {
         "node": ">=10"
       }
@@ -15882,6 +17115,16 @@
         "node": ">=12"
       }
     },
+    "node_modules/yauzl": {
+      "version": "2.10.0",
+      "resolved": "https://registry.npmjs.org/yauzl/-/yauzl-2.10.0.tgz",
+      "integrity": "sha512-p4a9I6X6nu6IhoGmBqAcbJy1mlC4j27vEPZX9F4L4/vZT3Lyq1VkFHw/V/PUcB9Buo+DG3iHkT0x3Qya58zc3g==",
+      "license": "MIT",
+      "dependencies": {
+        "buffer-crc32": "~0.2.3",
+        "fd-slicer": "~1.1.0"
+      }
+    },
     "node_modules/yjs": {
       "version": "13.6.11",
       "resolved": "https://registry.npmjs.org/yjs/-/yjs-13.6.11.tgz",
@@ -16060,6 +17303,7 @@
       "license": "MIT",
       "dependencies": {
         "@jupyterlab/services": "^7.0.0",
+        "@mermaid-js/mermaid-cli": "^10.9.1",
         "@reduxjs/toolkit": "^2.1.0",
         "adm-zip": "^0.5.10",
         "boxen": "^7.1.1",
diff --git a/packages/jtex/tests/download.spec.ts b/packages/jtex/tests/download.spec.ts
index c6fb378ff..ac3a3692b 100644
--- a/packages/jtex/tests/download.spec.ts
+++ b/packages/jtex/tests/download.spec.ts
@@ -4,57 +4,53 @@ import { TemplateKind } from 'myst-common';
 import MystTemplate, { downloadTemplate, resolveInputs, Session } from 'myst-templates';
 import { renderTemplate } from '../src';
 
-describe(
-  'Download Template',
-  () => {
-    it('Download default template', async () => {
-      const session = new Session();
-      const inputs = resolveInputs(session, { buildDir: '_build', kind: TemplateKind.tex });
-      await downloadTemplate(session, {
-        templatePath: inputs.templatePath,
-        templateUrl: inputs.templateUrl as string,
-      });
-      expect(fs.existsSync('_build/templates/tex/myst/plain_latex/template.zip')).toBe(true);
-      expect(fs.existsSync('_build/templates/tex/myst/plain_latex/template.yml')).toBe(true);
-      expect(fs.existsSync('_build/templates/tex/myst/plain_latex/template.tex')).toBe(true);
+describe('Download Template', { timeout: 15000 }, () => {
+  it('Download default template', async () => {
+    const session = new Session();
+    const inputs = resolveInputs(session, { buildDir: '_build', kind: TemplateKind.tex });
+    await downloadTemplate(session, {
+      templatePath: inputs.templatePath,
+      templateUrl: inputs.templateUrl as string,
     });
-    it('Bad template paths to throw', async () => {
-      const jtex = new MystTemplate(new Session(), {
-        template: 'not-there',
-        kind: TemplateKind.tex,
-      });
-      expect(() => jtex.prepare({} as any)).toThrow(/does not exist/);
+    expect(fs.existsSync('_build/templates/tex/myst/plain_latex/template.zip')).toBe(true);
+    expect(fs.existsSync('_build/templates/tex/myst/plain_latex/template.yml')).toBe(true);
+    expect(fs.existsSync('_build/templates/tex/myst/plain_latex/template.tex')).toBe(true);
+  });
+  it('Bad template paths to throw', async () => {
+    const jtex = new MystTemplate(new Session(), {
+      template: 'not-there',
+      kind: TemplateKind.tex,
     });
-    it('Render out the template', async () => {
-      const jtex = new MystTemplate(new Session(), {
-        kind: TemplateKind.tex,
-        template: `${__dirname}/example`,
-      });
-      renderTemplate(jtex, {
-        contentOrPath: `${__dirname}/test.tex`,
-        outputPath: '_build/out/article.tex',
-        frontmatter: {
-          title: 'test',
-          description: 'test',
-          date: new Date(2022, 6, 22).toISOString(),
-          authors: [
-            { name: 'Rowan Cockett', affiliations: ['Curvenote'] },
-            { name: 'Steve Purves', affiliations: ['Curvenote'], orcid: '0000' },
-          ],
-        },
-        options: {
-          keywords: '',
-        },
-        parts: {
-          abstract: 'My abstract!',
-        },
-      });
-      expect(fs.existsSync('_build/out/article.tex')).toBe(true);
-      const content = fs.readFileSync('_build/out/article.tex').toString();
-      expect(content.includes('Volcanic Archipelago')).toBe(true);
-      expect(content.includes('Rowan Cockett')).toBe(true);
-      expect(content.includes('My abstract!')).toBe(true);
+    expect(() => jtex.prepare({} as any)).toThrow(/does not exist/);
+  });
+  it('Render out the template', async () => {
+    const jtex = new MystTemplate(new Session(), {
+      kind: TemplateKind.tex,
+      template: `${__dirname}/example`,
     });
-  },
-  { timeout: 15000 },
-);
+    renderTemplate(jtex, {
+      contentOrPath: `${__dirname}/test.tex`,
+      outputPath: '_build/out/article.tex',
+      frontmatter: {
+        title: 'test',
+        description: 'test',
+        date: new Date(2022, 6, 22).toISOString(),
+        authors: [
+          { name: 'Rowan Cockett', affiliations: ['Curvenote'] },
+          { name: 'Steve Purves', affiliations: ['Curvenote'], orcid: '0000' },
+        ],
+      },
+      options: {
+        keywords: '',
+      },
+      parts: {
+        abstract: 'My abstract!',
+      },
+    });
+    expect(fs.existsSync('_build/out/article.tex')).toBe(true);
+    const content = fs.readFileSync('_build/out/article.tex').toString();
+    expect(content.includes('Volcanic Archipelago')).toBe(true);
+    expect(content.includes('Rowan Cockett')).toBe(true);
+    expect(content.includes('My abstract!')).toBe(true);
+  });
+});
diff --git a/packages/myst-cli/package.json b/packages/myst-cli/package.json
index 30d00c533..0219367e9 100644
--- a/packages/myst-cli/package.json
+++ b/packages/myst-cli/package.json
@@ -43,6 +43,7 @@
   },
   "dependencies": {
     "@jupyterlab/services": "^7.0.0",
+    "@mermaid-js/mermaid-cli": "^10.9.1",
     "@reduxjs/toolkit": "^2.1.0",
     "adm-zip": "^0.5.10",
     "boxen": "^7.1.1",
diff --git a/packages/myst-cli/src/build/docx/single.ts b/packages/myst-cli/src/build/docx/single.ts
index 6313f7b8f..5630dfa0b 100644
--- a/packages/myst-cli/src/build/docx/single.ts
+++ b/packages/myst-cli/src/build/docx/single.ts
@@ -28,6 +28,7 @@ import { cleanOutput } from '../utils/cleanOutput.js';
 import { getFileContent } from '../utils/getFileContent.js';
 import { createFooter } from './footers.js';
 import { createArticleTitle, createReferenceTitle } from './titles.js';
+import { createMermaidImageMystPlugin } from '../../transforms/mermaid.js';
 
 const DOCX_IMAGE_EXTENSIONS = [ImageExtensions.png, ImageExtensions.jpg, ImageExtensions.jpeg];
 
@@ -98,6 +99,7 @@ export async function runWordExport(
     projectPath,
     imageExtensions: DOCX_IMAGE_EXTENSIONS,
     extraLinkTransformers,
+    transforms: [createMermaidImageMystPlugin],
     preFrontmatters: [
       filterKeys(article, [...PAGE_FRONTMATTER_KEYS, ...Object.keys(FRONTMATTER_ALIASES)]),
     ],
diff --git a/packages/myst-cli/src/build/jats/single.ts b/packages/myst-cli/src/build/jats/single.ts
index 170d4ba8a..4f4e2e371 100644
--- a/packages/myst-cli/src/build/jats/single.ts
+++ b/packages/myst-cli/src/build/jats/single.ts
@@ -14,6 +14,7 @@ import { resolveFrontmatterParts } from '../../utils/resolveFrontmatterParts.js'
 import type { ExportWithOutput, ExportFnOptions } from '../types.js';
 import { cleanOutput } from '../utils/cleanOutput.js';
 import { getFileContent } from '../utils/getFileContent.js';
+import { createMermaidImageMystPlugin } from '../../transforms/mermaid.js';
 
 /**
  * Build a MyST project as JATS XML
@@ -39,6 +40,7 @@ export async function runJatsExport(
       projectPath,
       imageExtensions: KNOWN_IMAGE_EXTENSIONS,
       extraLinkTransformers,
+      transforms: [createMermaidImageMystPlugin],
       preFrontmatters: [
         filterKeys(article, [...PAGE_FRONTMATTER_KEYS, ...Object.keys(FRONTMATTER_ALIASES)]),
       ], // only apply to article, not sub_articles
diff --git a/packages/myst-cli/src/build/tex/single.ts b/packages/myst-cli/src/build/tex/single.ts
index de1414fcc..d579ecb94 100644
--- a/packages/myst-cli/src/build/tex/single.ts
+++ b/packages/myst-cli/src/build/tex/single.ts
@@ -34,6 +34,7 @@ import { createTempFolder } from '../../utils/createTempFolder.js';
 import { resolveFrontmatterParts } from '../../utils/resolveFrontmatterParts.js';
 import type { ExportWithOutput, ExportResults, ExportFnOptions } from '../types.js';
 import { writeBibtexFromCitationRenderers } from '../utils/bibtex.js';
+import { createMermaidImageMystPlugin } from '../../transforms/mermaid.js';
 
 export const DEFAULT_BIB_FILENAME = 'main.bib';
 const TEX_IMAGE_EXTENSIONS = [
@@ -140,6 +141,7 @@ export async function localArticleToTexRaw(
       projectPath,
       imageExtensions: TEX_IMAGE_EXTENSIONS,
       extraLinkTransformers,
+      transforms: [createMermaidImageMystPlugin],
       titleDepths: fileArticles.map((article) => article.level),
       preFrontmatters: fileArticles.map((article) =>
         filterKeys(article, [...PAGE_FRONTMATTER_KEYS, ...Object.keys(FRONTMATTER_ALIASES)]),
@@ -206,6 +208,7 @@ export async function localArticleToTexTemplated(
       projectPath,
       imageExtensions: TEX_IMAGE_EXTENSIONS,
       extraLinkTransformers,
+      transforms: [createMermaidImageMystPlugin],
       titleDepths: fileArticles.map((article) => article.level),
       preFrontmatters: fileArticles.map((article) =>
         filterKeys(article, [...PAGE_FRONTMATTER_KEYS, ...Object.keys(FRONTMATTER_ALIASES)]),
diff --git a/packages/myst-cli/src/build/typst.ts b/packages/myst-cli/src/build/typst.ts
index 02655e8cb..26ec43186 100644
--- a/packages/myst-cli/src/build/typst.ts
+++ b/packages/myst-cli/src/build/typst.ts
@@ -37,6 +37,7 @@ import version from '../version.js';
 import { cleanOutput } from './utils/cleanOutput.js';
 import type { ExportWithOutput, ExportResults, ExportFnOptions } from './types.js';
 import { writeBibtexFromCitationRenderers } from './utils/bibtex.js';
+import { createMermaidImageMystPlugin } from '../transforms/mermaid.js';
 
 export const DEFAULT_BIB_FILENAME = 'main.bib';
 const TYPST_IMAGE_EXTENSIONS = [
@@ -158,6 +159,7 @@ export async function localArticleToTypstRaw(
       projectPath,
       imageExtensions: TYPST_IMAGE_EXTENSIONS,
       extraLinkTransformers,
+      transforms: [createMermaidImageMystPlugin],
       titleDepths: fileArticles.map((article) => article.level),
       preFrontmatters: fileArticles.map((article) =>
         filterKeys(article, [...PAGE_FRONTMATTER_KEYS, ...Object.keys(FRONTMATTER_ALIASES)]),
@@ -229,6 +231,7 @@ export async function localArticleToTypstTemplated(
       projectPath,
       imageExtensions: TYPST_IMAGE_EXTENSIONS,
       extraLinkTransformers,
+      transforms: [createMermaidImageMystPlugin],
       titleDepths: fileArticles.map((article) => article.level),
       preFrontmatters: fileArticles.map((article) =>
         filterKeys(article, [...PAGE_FRONTMATTER_KEYS, ...Object.keys(FRONTMATTER_ALIASES)]),
diff --git a/packages/myst-cli/src/build/utils/getFileContent.ts b/packages/myst-cli/src/build/utils/getFileContent.ts
index 058b6d29d..4a2c5d251 100644
--- a/packages/myst-cli/src/build/utils/getFileContent.ts
+++ b/packages/myst-cli/src/build/utils/getFileContent.ts
@@ -1,4 +1,5 @@
 import { resolve } from 'node:path';
+import type { TransformSpec } from 'myst-common';
 import { plural } from 'myst-common';
 import { tic } from 'myst-cli-utils';
 import type { LinkTransformer } from 'myst-transforms';
@@ -19,6 +20,7 @@ export async function getFileContent(
     projectPath,
     imageExtensions,
     extraLinkTransformers,
+    transforms,
     extraTransforms,
     titleDepths,
     preFrontmatters,
@@ -27,6 +29,8 @@ export async function getFileContent(
     projectPath?: string;
     imageExtensions: ImageExtensions[];
     extraLinkTransformers?: LinkTransformer[];
+    transforms?: TransformSpec[];
+    /** @deprecated use transforms instead */
     extraTransforms?: TransformFn[];
     titleDepths?: number | (number | undefined)[];
     preFrontmatters?: Record<string, any> | (Record<string, any> | undefined)[];
@@ -72,6 +76,7 @@ export async function getFileContent(
         minifyMaxCharacters: 0,
         index: project.index,
         titleDepth,
+        transforms,
         extraTransforms,
         execute,
       });
diff --git a/packages/myst-cli/src/process/mdast.ts b/packages/myst-cli/src/process/mdast.ts
index be10767d2..b621e623d 100644
--- a/packages/myst-cli/src/process/mdast.ts
+++ b/packages/myst-cli/src/process/mdast.ts
@@ -1,6 +1,12 @@
 import path from 'node:path';
 import { tic } from 'myst-cli-utils';
-import type { GenericParent, IExpressionResult, PluginUtils, References } from 'myst-common';
+import type {
+  GenericParent,
+  IExpressionResult,
+  PluginUtils,
+  References,
+  TransformSpec,
+} from 'myst-common';
 import { fileError, fileWarn, RuleId, slugToUrl } from 'myst-common';
 import type { PageFrontmatter } from 'myst-frontmatter';
 import { SourceFileKind } from 'myst-spec-ext';
@@ -112,6 +118,8 @@ export async function transformMdast(
     imageExtensions?: ImageExtensions[];
     watchMode?: boolean;
     execute?: boolean;
+    transforms?: TransformSpec[];
+    /** @deprecated Use `session.plugins?.transforms` instead */
     extraTransforms?: TransformFn[];
     minifyMaxCharacters?: number;
     index?: string;
@@ -125,6 +133,7 @@ export async function transformMdast(
     pageSlug,
     projectSlug,
     imageExtensions,
+    transforms,
     extraTransforms,
     watchMode = false,
     minifyMaxCharacters,
@@ -204,10 +213,15 @@ export async function transformMdast(
     })
     .use(inlineMathSimplificationPlugin, { replaceSymbol: false })
     .use(mathPlugin, { macros: frontmatter.math });
+  // Load transform functions from options (we always run all of them)
+  transforms?.forEach((t) => {
+    pipe.use(t.plugin, t.options, pluginUtils);
+  });
+
   // Load custom transform plugins
   session.plugins?.transforms.forEach((t) => {
     if (t.stage !== 'document') return;
-    pipe.use(t.plugin, undefined, pluginUtils);
+    pipe.use(t.plugin, t.options, pluginUtils);
   });
 
   pipe
@@ -361,7 +375,7 @@ export async function postProcessMdast(
   const pipe = unified();
   session.plugins?.transforms.forEach((t) => {
     if (t.stage !== 'project') return;
-    pipe.use(t.plugin, undefined, pluginUtils);
+    pipe.use(t.plugin, t.options, pluginUtils);
   });
   await pipe.run(mdast, vfile);
 
diff --git a/packages/myst-cli/src/transforms/index.ts b/packages/myst-cli/src/transforms/index.ts
index 6bdd85242..ed139f0da 100644
--- a/packages/myst-cli/src/transforms/index.ts
+++ b/packages/myst-cli/src/transforms/index.ts
@@ -10,4 +10,5 @@ export * from './links.js';
 export * from './mdast.js';
 export * from './outputs.js';
 export * from './inlineExpressions.js';
+export * from './mermaid.js';
 export * from './types.js';
diff --git a/packages/myst-cli/src/transforms/mermaid.spec.ts b/packages/myst-cli/src/transforms/mermaid.spec.ts
new file mode 100644
index 000000000..6706df744
--- /dev/null
+++ b/packages/myst-cli/src/transforms/mermaid.spec.ts
@@ -0,0 +1,184 @@
+import { describe, it, expect } from 'vitest';
+import { VFile } from 'vfile';
+import type { GenericParent } from 'myst-common';
+import { mermaidTransform, renderMermaidDiagram } from './mermaid.js';
+
+describe('renderMermaidDiagram', () => {
+  it('should render simple flowchart to base64 SVG', { timeout: 15000 }, async () => {
+    const file = new VFile();
+    const mermaidNode = {
+      type: 'mermaid' as const,
+      value: 'flowchart LR\n  A --> B',
+      identifier: 'test-diagram',
+    };
+
+    const result = await renderMermaidDiagram(file, mermaidNode);
+
+    expect(result.type).toBe('image');
+    if (result.type === 'image') {
+      expect(result.url).toMatch(/^data:image\/svg\+xml;base64,/);
+      expect(result.alt).toBe('Mermaid diagram: flowchart LR');
+      expect(result.title).toBe('Mermaid diagram');
+      expect(result.identifier).toBe('test-diagram');
+
+      // Decode and verify SVG content
+      const base64Content = result.url.replace('data:image/svg+xml;base64,', '');
+      const svgContent = Buffer.from(base64Content, 'base64').toString('utf-8');
+
+      expect(svgContent).toContain('<svg');
+      expect(svgContent).toContain('A');
+      expect(svgContent).toContain('B');
+
+      // console.log('Generated SVG preview:', svgContent.substring(0, 200) + '...');
+    }
+  });
+
+  it('should render complex diagram with decision nodes', { timeout: 15000 }, async () => {
+    const file = new VFile();
+    const mermaidNode = {
+      type: 'mermaid' as const,
+      value: `graph TD
+  A[Start] --> B{Decision}
+  B -->|Yes| C[OK]
+  B -->|No| D[Cancel]`,
+      identifier: 'complex-diagram',
+    };
+
+    const result = await renderMermaidDiagram(file, mermaidNode);
+
+    expect(result.type).toBe('image');
+    if (result.type === 'image') {
+      const base64Content = result.url.replace('data:image/svg+xml;base64,', '');
+      const svgContent = Buffer.from(base64Content, 'base64').toString('utf-8');
+
+      expect(svgContent).toContain('<svg');
+      expect(svgContent).toContain('Start');
+      expect(svgContent).toContain('Decision');
+      expect(svgContent).toContain('OK');
+      expect(svgContent).toContain('Cancel');
+
+      // console.log('Complex diagram SVG preview:', svgContent.substring(0, 200) + '...');
+    }
+  });
+
+  it('should render sequence diagram', { timeout: 15000 }, async () => {
+    const file = new VFile();
+    const mermaidNode = {
+      type: 'mermaid' as const,
+      value: `sequenceDiagram
+  participant Alice
+  participant Bob
+  Alice->>John: Hello John, how are you?
+  loop Healthcheck
+    John->>John: Fight against hypochondria
+  end`,
+      identifier: 'sequence-diagram',
+    };
+
+    const result = await renderMermaidDiagram(file, mermaidNode);
+
+    expect(result.type).toBe('image');
+    if (result.type === 'image') {
+      const base64Content = result.url.replace('data:image/svg+xml;base64,', '');
+      const svgContent = Buffer.from(base64Content, 'base64').toString('utf-8');
+
+      expect(svgContent).toContain('<svg');
+      expect(svgContent).toContain('Alice');
+      expect(svgContent).toContain('Bob');
+      expect(svgContent).toContain('John');
+
+      // console.log('Sequence diagram SVG preview:', svgContent.substring(0, 200) + '...');
+    }
+  });
+
+  it('should preserve node metadata in image output', { timeout: 15000 }, async () => {
+    const file = new VFile();
+    const mermaidNode = {
+      type: 'mermaid' as const,
+      value: 'flowchart LR\n  A --> B',
+      identifier: 'preserved-id',
+      label: 'preserved-label',
+      html_id: 'preserved-html-id',
+    };
+
+    const result = await renderMermaidDiagram(file, mermaidNode);
+
+    expect(result.type).toBe('image');
+    if (result.type === 'image') {
+      expect(result.identifier).toBe('preserved-id');
+      expect(result.label).toBe('preserved-label');
+      expect(result.html_id).toBe('preserved-html-id');
+    }
+  });
+});
+
+describe('mermaidTransform - real tree transformation', () => {
+  it('should transform all mermaid nodes in a tree', { timeout: 15000 }, async () => {
+    const file = new VFile();
+    const tree: GenericParent = {
+      type: 'root',
+      children: [
+        {
+          type: 'mermaid',
+          value: 'flowchart LR\n  A --> B',
+          identifier: 'diagram1',
+        },
+        {
+          type: 'paragraph',
+          children: [{ type: 'text', value: 'Some text' }],
+        },
+        {
+          type: 'mermaid',
+          value: 'graph TD\n  A --> B --> C',
+          identifier: 'diagram2',
+        },
+      ],
+    };
+
+    await mermaidTransform(tree, file);
+
+    expect(tree.children[0].type).toBe('image');
+    if (tree.children[0].type === 'image') {
+      expect(tree.children[0].url).toMatch(/^data:image\/svg\+xml;base64,/);
+      expect(tree.children[0].identifier).toBe('diagram1');
+    }
+
+    expect(tree.children[1].type).toBe('paragraph'); // Should remain unchanged
+
+    expect(tree.children[2].type).toBe('image');
+    if (tree.children[2].type === 'image') {
+      expect(tree.children[2].url).toMatch(/^data:image\/svg\+xml;base64,/);
+      expect(tree.children[2].identifier).toBe('diagram2');
+    }
+  });
+});
+
+describe('base64 validation - real SVG content', () => {
+  it('should produce valid base64 data URLs with real SVGs', { timeout: 15000 }, async () => {
+    const file = new VFile();
+    const mermaidNode = {
+      type: 'mermaid' as const,
+      value: 'flowchart LR\n  A --> B',
+    };
+
+    const result = await renderMermaidDiagram(file, mermaidNode);
+
+    expect(result.type).toBe('image');
+    if (result.type === 'image') {
+      expect(result.url).toMatch(/^data:image\/svg\+xml;base64,/);
+
+      // Verify the base64 content can be decoded
+      const base64Content = result.url.replace('data:image/svg+xml;base64,', '');
+      const decodedSvg = Buffer.from(base64Content, 'base64').toString('utf-8');
+
+      expect(decodedSvg).toContain('<svg');
+      expect(decodedSvg).toContain('xmlns="http://www.w3.org/2000/svg"');
+      expect(decodedSvg).toContain('A');
+      expect(decodedSvg).toContain('B');
+
+      // Log the actual SVG content for inspection
+      // console.log('Real SVG content length:', decodedSvg.length);
+      // console.log('Real SVG preview:', decodedSvg.substring(0, 500) + '...');
+    }
+  });
+});
diff --git a/packages/myst-cli/src/transforms/mermaid.ts b/packages/myst-cli/src/transforms/mermaid.ts
new file mode 100644
index 000000000..17386f39c
--- /dev/null
+++ b/packages/myst-cli/src/transforms/mermaid.ts
@@ -0,0 +1,161 @@
+import type { Plugin } from 'unified';
+import type { VFile } from 'vfile';
+import type { GenericParent, TransformSpec } from 'myst-common';
+import type { Image as ImageNode } from 'myst-spec-ext';
+import { selectAll } from 'unist-util-select';
+import { fileError, fileWarn, RuleId } from 'myst-common';
+import { exec } from 'child_process';
+import { promisify } from 'util';
+import fs from 'fs/promises';
+import path from 'path';
+import crypto from 'crypto';
+import which from 'which';
+import { createTempFolder } from '../utils/createTempFolder.js';
+import pLimit from 'p-limit';
+
+const execAsync = promisify(exec);
+
+// Create a limiter with concurrency limit
+const limitConnections = pLimit(5);
+
+function isMermaidCliAvailable(): boolean {
+  return !!which.sync('mmdc', { nothrow: true });
+}
+
+export type MermaidOptions = {
+  theme?: 'default' | 'forest' | 'dark' | 'neutral';
+  format?: 'png' | 'svg';
+};
+
+interface MermaidNode {
+  type: 'mermaid';
+  value: string;
+  identifier?: string;
+  label?: string;
+  html_id?: string;
+}
+
+async function renderMermaidToBase64(
+  mermaidCode: string,
+  theme = 'default',
+  format: 'png' | 'svg' = 'svg',
+): Promise<string> {
+  // Create unique temporary output file name
+  const hash = crypto.createHash('md5').update(mermaidCode).digest('hex');
+  const tempFolder = createTempFolder();
+  const outputFile = path.join(tempFolder, `mermaid-output-${hash}.${format}`);
+
+  if (!isMermaidCliAvailable()) {
+    throw new Error('Mermaid CLI is not available');
+  }
+
+  try {
+    // Create puppeteer config file for CI environments
+    // See https://github.com/mermaid-js/mermaid-cli/blob/master/docs/linux-sandbox-issue.md
+    const useNoSandbox = process.env.MERMAID_NO_SANDBOX === 'true' || process.env.CI === 'true';
+    let puppeteerConfigFlag = '';
+
+    if (useNoSandbox) {
+      const puppeteerConfigPath = path.join(tempFolder, 'puppeteer-config.json');
+      const puppeteerConfig = { args: ['--no-sandbox'] };
+      await fs.writeFile(puppeteerConfigPath, JSON.stringify(puppeteerConfig, null, 2));
+      puppeteerConfigFlag = ` -p "${puppeteerConfigPath}"`;
+    }
+
+    // Render using Mermaid CLI with stdin input
+    await execAsync(
+      `echo '${mermaidCode.replace(/'/g, "'\"'\"'")}' | mmdc -i - -o "${outputFile}" -t ${theme} -b transparent${puppeteerConfigFlag}`,
+    );
+
+    // Read the generated file
+    const fileContent = await fs.readFile(outputFile, format === 'svg' ? 'utf-8' : undefined);
+
+    // Convert to base64
+    const base64Content = Buffer.from(fileContent).toString('base64');
+    const mimeType = format === 'svg' ? 'image/svg+xml' : 'image/png';
+    const dataUrl = `data:${mimeType};base64,${base64Content}`;
+
+    return dataUrl;
+  } finally {
+    // Clean up temporary file
+    try {
+      await fs.rm(tempFolder, { recursive: true, force: true });
+    } catch (error) {
+      // Ignore cleanup errors
+    }
+  }
+}
+
+export async function renderMermaidDiagram(
+  file: VFile,
+  node: MermaidNode,
+  opts?: MermaidOptions,
+): Promise<ImageNode | MermaidNode> {
+  const { value } = node;
+  if (!value) {
+    const message = 'No input for mermaid node';
+    fileWarn(file, message, {
+      node,
+      ruleId: RuleId.directiveArgumentCorrect,
+    });
+    return node;
+  }
+
+  try {
+    const base64Url = await renderMermaidToBase64(value, opts?.theme, opts?.format);
+
+    // Create image node
+    const imageNode: ImageNode = {
+      type: 'image',
+      url: base64Url,
+      alt: `Mermaid diagram: ${value.split('\n')[0]}`,
+      title: 'Mermaid diagram',
+      identifier: node.identifier,
+      label: node.label,
+      html_id: node.html_id,
+    };
+
+    return imageNode;
+  } catch (error) {
+    const message = `Failed to render Mermaid diagram: ${(error as Error).message}`;
+    fileError(file, message, {
+      ruleId: RuleId.imageFormatConverts,
+      node,
+      note: 'To install the Mermaid CLI, run `npm install -g @mermaid-js/mermaid-cli`',
+    });
+    return node;
+  }
+}
+
+export async function mermaidTransform(tree: GenericParent, file: VFile, opts?: MermaidOptions) {
+  const nodes = selectAll('mermaid', tree) as MermaidNode[];
+  await Promise.all(
+    nodes.map(async (node) =>
+      limitConnections(async () => {
+        const result = await renderMermaidDiagram(file, node, opts);
+        // Replace the mermaid node with the image node if successful
+        if (result.type === 'image') {
+          // Delete all keys from the original node and replace with result
+          Object.keys(node).forEach((key) => {
+            delete (node as any)[key];
+          });
+          Object.assign(node, result);
+        }
+      }),
+    ),
+  );
+}
+
+export const mermaidPlugin: Plugin<[MermaidOptions?], GenericParent, GenericParent> =
+  (opts) => async (tree, file) => {
+    await mermaidTransform(tree, file, opts);
+  };
+
+export const createMermaidImageMystPlugin: TransformSpec = {
+  name: 'mermaid',
+  stage: 'document',
+  plugin: mermaidPlugin,
+  options: {
+    format: 'png',
+  },
+};
diff --git a/packages/myst-common/src/types.ts b/packages/myst-common/src/types.ts
index 1c8e4bf5d..0aa0acffc 100644
--- a/packages/myst-common/src/types.ts
+++ b/packages/myst-common/src/types.ts
@@ -129,6 +129,7 @@ export type TransformSpec = {
     GenericParent,
     GenericParent | Promise<GenericParent>
   >;
+  options?: PluginOptions;
 };
 
 /**
diff --git a/packages/myst-spec-ext/src/types.ts b/packages/myst-spec-ext/src/types.ts
index b58ef8f9b..f0edd2437 100644
--- a/packages/myst-spec-ext/src/types.ts
+++ b/packages/myst-spec-ext/src/types.ts
@@ -115,6 +115,9 @@ export type Image = SpecImage & {
   urlOptimized?: string;
   height?: string;
   placeholder?: boolean;
+  label?: string;
+  identifier?: string;
+  html_id?: string;
 };
 
 export type Iframe = Target & {
diff --git a/packages/myst-transforms/package.json b/packages/myst-transforms/package.json
index c5d675787..1896616c4 100644
--- a/packages/myst-transforms/package.json
+++ b/packages/myst-transforms/package.json
@@ -21,10 +21,10 @@
   "dependencies": {
     "doi-utils": "^2.0.5",
     "hast-util-from-html": "^2.0.1",
+    "hast-util-to-mdast": "^8.3.1",
     "intersphinx": "^1.0.2",
     "js-yaml": "^4.1.0",
     "katex": "^0.15.2",
-    "hast-util-to-mdast": "^8.3.1",
     "mdast-util-find-and-replace": "^2.1.0",
     "myst-common": "^1.8.0",
     "myst-frontmatter": "^1.8.0",
@@ -36,8 +36,8 @@
     "unified": "^10.0.0",
     "unist-builder": "^3.0.0",
     "unist-util-find-after": "^4.0.0",
-    "unist-util-modify-children": "^3.1.0",
     "unist-util-map": "^3.0.0",
+    "unist-util-modify-children": "^3.1.0",
     "unist-util-remove": "^3.1.0",
     "unist-util-select": "^4.0.3",
     "unist-util-visit": "^4.1.0",