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Lose the data of the example:./data/attr.tbl.example.csv #3

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Squirrelity opened this issue Jan 16, 2024 · 1 comment
Open

Lose the data of the example:./data/attr.tbl.example.csv #3

Squirrelity opened this issue Jan 16, 2024 · 1 comment

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@Squirrelity
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Thank you for your R package

When I tried to run Infernape_apa, I found that the data file of example was missing one file:attr.tbl.example.csv
Infernape_apa(counts.dir = './result/cnt_mat',
attr.file = './data/attr.tbl.example.csv',
anno.file = './result/anno_filtered.csv',
utr3.file = './data/ref.utr3.anno.csv',
ctype.colname = 'ctype',
base_grp = 'c1',
alt_grp = 'c2',
cut.low.pct = 0.05,
cut.pval = 0.05,
cut.MPRO = 0.2,
test.type = 'gene',
out.dir = './result'
)

Could you please upload it again?Thank you again.

@kangbw702
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kangbw702 commented Jan 19, 2024

Hi, please use attr.tbl.TEGLU16.example.csv if you are analyzing TEGLU16.bam in function Infernape_cnt.

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