From 53a4495cbb818084cf78f7c6ad6550ea666720d6 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Karl=20Nordstr=C3=B6m?= <karl.nordstrom@gmail.com>
Date: Thu, 7 Mar 2019 14:46:35 +0100
Subject: [PATCH] Update README.md

---
 README.md | 10 ++++++++++
 1 file changed, 10 insertions(+)

diff --git a/README.md b/README.md
index 7b8bb6d..a09f6b4 100644
--- a/README.md
+++ b/README.md
@@ -33,6 +33,16 @@ gNOMePeaks utilizes the R package HiddenMarkov for hidden Markov models. This pa
 R CMD INSTALL ...PATH.../gNOMePeaks/thirdParty/HiddenMarkov.mod
 ```
 
+## Run
+
+To execute, simply run:
+
+```
+bash gNOMeHMM.sh -h
+```
+
+This will print the available options with their description.
+
 ## Output format
 
 The gNOMePeaks output table contains the following fields: