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PEREGRINE Documentation

Executable Mode

PEREGRINE can run in both a scriptable mode for simple cases, or executable mode for larger production runs. For examples of scripting modes, see examples. For executable mode, see the case directory structure here.

CoProcessing

Coprocessing with ParaView is amazing, but takes effort to make it work well in my experience. It seems they have cleaned it up a lot from back in the day. To start download and install Paraview from source. I have tested up to 5.11 and it works well for me. To make coprocessing work, you need to compile paraview in catalyst mode. With cmake, pass the argument:

ccmake -DPARAVIEW_BUILD_EDITION:STRING=CATALYST /path/to/ParaView_src/

Assume you are installing it in /path/to/paraview.

Some Tips and Tricks

You must set the cmake flags:

PARAVIEW_USE_MPI=ON
PARAVIEW_USE_PYTHON=ON

Make sure ParaView finds the correct python you are planning to use with PEREGRINE.

Once you configure a bunch of times, look for a group of options that look like VTK_MODULE_USE_EXTERNAL_VTK_*. You want to turn on as many of those as you can, otherwise ParaView will download, and fail, to install many of these. Especially mpi4py, png, libxml and so on. Hopefully your cluster has these already and you can module load them, or your package manager probably has them too.

Running

To get it to work, you have to set these environment variables so python can find the catalyst install.

export PYTHONPATH=$PYTHONPATH:/path/to/paraview/lib/python3.XX/site-packages
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/path/to/paraview/lib
export PYTHONPATH=$PYTHONPATH:/path/to/paraview/lib

You will know it worked if from paraview.catalyst import bridge works in an interpreter.

Good Luck!

Code Structure