From d31cb437dfdd0b0941747e3ba70ad8911bbc4d2e Mon Sep 17 00:00:00 2001 From: Ben Chambers <35960+bjchambers@users.noreply.github.com> Date: Sun, 6 Aug 2023 20:51:34 -0700 Subject: [PATCH] feat: First pass at doc site for Python (#605) This uses Sphinx and the [sphinx-book-theme](https://sphinx-book-theme.readthedocs.io/en/stable/) to create organized documentation of the available methods for creating and executing timestreams. Sphinx makes it easy to include syntax-highlighted examples from the documentation, as well as embedding the **rendered** notebook output of cells (embedding them in documentation we write) and even including notebooks as part of the documentation. With a few tweaks, we can make every notebook cell executable as well. See for instance https://jupyterbook.org/en/stable/interactive/thebe.html. --- sparrow-py/docs/.gitignore | 3 + sparrow-py/docs/quickstart.md | 6 - sparrow-py/docs/reference/execution.md | 11 - sparrow-py/docs/reference/sources.md | 6 - sparrow-py/docs/reference/timestream.md | 17 - sparrow-py/docs/source/_static/favicon.png | Bin 0 -> 5056 bytes .../source/_templates/autosummary/class.rst | 5 + .../_templates/autosummary/function.rst | 5 + .../source/_templates/autosummary/method.rst | 5 + sparrow-py/docs/source/concepts.md | 1 + sparrow-py/docs/{ => source}/conf.py | 69 +- sparrow-py/docs/source/examples/index.md | 1 + sparrow-py/docs/{ => source}/index.md | 10 +- sparrow-py/docs/source/quickstart.md | 33 + sparrow-py/docs/source/reference/results.md | 10 + sparrow-py/docs/source/reference/sources.md | 11 + .../reference/timestream/aggregation.md | 22 + .../source/reference/timestream/arithmetic.md | 18 + .../source/reference/timestream/comparison.md | 17 + .../source/reference/timestream/execution.md | 11 + .../docs/source/reference/timestream/index.md | 28 + .../source/reference/timestream/logical.md | 12 + .../docs/source/reference/timestream/misc.md | 10 + .../source/reference/timestream/records.md | 17 + sparrow-py/docs/source/reference/windows.md | 11 + sparrow-py/noxfile.py | 13 +- sparrow-py/poetry.lock | 1243 ++++++++++++++++- sparrow-py/pyproject.toml | 4 +- sparrow-py/pysrc/sparrow_py/_result.py | 1 - sparrow-py/pysrc/sparrow_py/_timestream.py | 35 +- sparrow-py/pytests/timestream_test.py | 8 + 31 files changed, 1504 insertions(+), 139 deletions(-) delete mode 100644 sparrow-py/docs/quickstart.md delete mode 100644 sparrow-py/docs/reference/execution.md delete mode 100644 sparrow-py/docs/reference/sources.md delete mode 100644 sparrow-py/docs/reference/timestream.md create mode 100644 sparrow-py/docs/source/_static/favicon.png create mode 100644 sparrow-py/docs/source/_templates/autosummary/class.rst create mode 100644 sparrow-py/docs/source/_templates/autosummary/function.rst create mode 100644 sparrow-py/docs/source/_templates/autosummary/method.rst create mode 100644 sparrow-py/docs/source/concepts.md rename sparrow-py/docs/{ => source}/conf.py (50%) create mode 100644 sparrow-py/docs/source/examples/index.md rename sparrow-py/docs/{ => source}/index.md (84%) create mode 100644 sparrow-py/docs/source/quickstart.md create mode 100644 sparrow-py/docs/source/reference/results.md create mode 100644 sparrow-py/docs/source/reference/sources.md create mode 100644 sparrow-py/docs/source/reference/timestream/aggregation.md create mode 100644 sparrow-py/docs/source/reference/timestream/arithmetic.md create mode 100644 sparrow-py/docs/source/reference/timestream/comparison.md create mode 100644 sparrow-py/docs/source/reference/timestream/execution.md create mode 100644 sparrow-py/docs/source/reference/timestream/index.md create mode 100644 sparrow-py/docs/source/reference/timestream/logical.md create mode 100644 sparrow-py/docs/source/reference/timestream/misc.md create mode 100644 sparrow-py/docs/source/reference/timestream/records.md create mode 100644 sparrow-py/docs/source/reference/windows.md diff --git a/sparrow-py/docs/.gitignore b/sparrow-py/docs/.gitignore index e35d8850c..38344910f 100644 --- a/sparrow-py/docs/.gitignore +++ b/sparrow-py/docs/.gitignore @@ -1 +1,4 @@ _build +.jupyter_cache +jupyter_execute +source/reference/**/api \ No newline at end of file diff --git a/sparrow-py/docs/quickstart.md b/sparrow-py/docs/quickstart.md deleted file mode 100644 index ff62d87ba..000000000 --- a/sparrow-py/docs/quickstart.md +++ /dev/null @@ -1,6 +0,0 @@ -# Quick Start - -```{todo} - -Write the quick start. -``` \ No newline at end of file diff --git a/sparrow-py/docs/reference/execution.md b/sparrow-py/docs/reference/execution.md deleted file mode 100644 index 5bef2e650..000000000 --- a/sparrow-py/docs/reference/execution.md +++ /dev/null @@ -1,11 +0,0 @@ -# Execution - -There are several ways to execute a Timestream. -The {py:meth}`run method ` executes the Timestream over the current data, and produces a {py:class}`Result `. - -## Result -```{eval-rst} -.. autoclass:: sparrow_py.Result - :exclude-members: __init__ - :members: -``` \ No newline at end of file diff --git a/sparrow-py/docs/reference/sources.md b/sparrow-py/docs/reference/sources.md deleted file mode 100644 index b2daf7f82..000000000 --- a/sparrow-py/docs/reference/sources.md +++ /dev/null @@ -1,6 +0,0 @@ -# Sources - -```{eval-rst} -.. automodule:: sparrow_py.sources - :members: -``` \ No newline at end of file diff --git a/sparrow-py/docs/reference/timestream.md b/sparrow-py/docs/reference/timestream.md deleted file mode 100644 index af96ae146..000000000 --- a/sparrow-py/docs/reference/timestream.md +++ /dev/null @@ -1,17 +0,0 @@ -# Timestream - -```{todo} -- [ ] Expand the `Arg` type alias in timestreams accordingly. -``` - -```{eval-rst} -.. autoclass:: sparrow_py.Timestream - 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a/sparrow-py/docs/source/_templates/autosummary/class.rst b/sparrow-py/docs/source/_templates/autosummary/class.rst new file mode 100644 index 000000000..e48626618 --- /dev/null +++ b/sparrow-py/docs/source/_templates/autosummary/class.rst @@ -0,0 +1,5 @@ +{{ objname | escape | underline}} + +.. currentmodule:: {{ module }} + +.. auto{{ objtype }}:: {{ objname }} \ No newline at end of file diff --git a/sparrow-py/docs/source/_templates/autosummary/function.rst b/sparrow-py/docs/source/_templates/autosummary/function.rst new file mode 100644 index 000000000..e48626618 --- /dev/null +++ b/sparrow-py/docs/source/_templates/autosummary/function.rst @@ -0,0 +1,5 @@ +{{ objname | escape | underline}} + +.. currentmodule:: {{ module }} + +.. auto{{ objtype }}:: {{ objname }} \ No newline at end of file diff --git a/sparrow-py/docs/source/_templates/autosummary/method.rst b/sparrow-py/docs/source/_templates/autosummary/method.rst new file mode 100644 index 000000000..e48626618 --- /dev/null +++ b/sparrow-py/docs/source/_templates/autosummary/method.rst @@ -0,0 +1,5 @@ +{{ objname | escape | underline}} + +.. currentmodule:: {{ module }} + +.. auto{{ objtype }}:: {{ objname }} \ No newline at end of file diff --git a/sparrow-py/docs/source/concepts.md b/sparrow-py/docs/source/concepts.md new file mode 100644 index 000000000..639d88086 --- /dev/null +++ b/sparrow-py/docs/source/concepts.md @@ -0,0 +1 @@ +# Concepts \ No newline at end of file diff --git a/sparrow-py/docs/conf.py b/sparrow-py/docs/source/conf.py similarity index 50% rename from sparrow-py/docs/conf.py rename to sparrow-py/docs/source/conf.py index 8f93ee912..15b1df98c 100644 --- a/sparrow-py/docs/conf.py +++ b/sparrow-py/docs/source/conf.py @@ -7,40 +7,68 @@ copyright = "2023, Kaskada Contributors" extensions = [ "sphinx.ext.autodoc", + "sphinx.ext.autosummary", "sphinx.ext.napoleon", "sphinx.ext.intersphinx", "sphinx.ext.todo", - "myst_parser", + # "myst_parser", + "myst_nb", + "sphinx_copybutton", ] autodoc_typehints = "description" -html_theme = "furo" -html_title = "Kaskada" language = "en" -intersphinx_mapping: Dict[str, Any] = { - 'python': ('http://docs.python.org/3', None), - 'pandas': ('http://pandas.pydata.org/docs', None), - 'pyarrow': ('https://arrow.apache.org/docs', None), -} +html_theme = "sphinx_book_theme" +html_favicon = "_static/favicon.png" +html_logo = "_static/kaskada.svg" +html_title = "Kaskada Timestreams" html_theme_options: Dict[str, Any] = { - "footer_icons": [ + "repository_url": "https://github.com/kaskada-ai/kaskada", + "use_repository_button": True, + "use_source_button": True, + "use_edit_page_button": True, + "use_issues_button": True, + "repository_branch": "main", + "path_to_docs": "sparrow-py/docs/", + "icon_links": [ { "name": "GitHub", - "url": "https://github.com/kaskada-ai/kaskada", - "html": """ - - - - """, - "class": "", + "url": "https://github.com/kaskada-ai/kaskada", # required + "icon": "fa-brands fa-square-github", + "type": "fontawesome", + }, + { + "name": "Slack", + "url": "https://join.slack.com/t/kaskada-hq/shared_invite/zt-1t1lms085-bqs2jtGO2TYr9kuuam~c9w", + "icon": "fa-brands fa-slack", }, ], - "source_repository": "https://github.com/kaskada-ai/kaskada/", - "source_branch": "main", - "source_directory": "sparrow-py/docs/", + "show_nav_level": 3, + "show_toc_level": 2, +} + +templates_path = ["_templates"] +html_static_path = ["_static"] + +html_context = { + "github_user": "kaskada-ai", + "github_repo": "kaskada", + "github_version": "main", + "doc_path": "sparrow-py/docs/", } +intersphinx_mapping: Dict[str, Any] = { + 'python': ('http://docs.python.org/3', None), + 'pandas': ('http://pandas.pydata.org/docs', None), + 'pyarrow': ('https://arrow.apache.org/docs', None), +} + +# adds useful copy functionality to all the examples; also +# strips the '>>>' and '...' prompt/continuation prefixes. +copybutton_prompt_text = r">>> |\.\.\. " +copybutton_prompt_is_regexp = True + # Options for Todos todo_include_todos = True @@ -54,7 +82,6 @@ ] myst_heading_anchors = 3 -# Suggested options from Furo theme # -- Options for autodoc ---------------------------------------------------- # https://www.sphinx-doc.org/en/master/usage/extensions/autodoc.html#configuration @@ -66,3 +93,5 @@ autodoc_class_signature = "separated" autodoc_type_aliases = { 'Arg': 'sparrow_py.Arg' } + +autosummary_generate = True diff --git a/sparrow-py/docs/source/examples/index.md b/sparrow-py/docs/source/examples/index.md new file mode 100644 index 000000000..1b976a9b7 --- /dev/null +++ b/sparrow-py/docs/source/examples/index.md @@ -0,0 +1 @@ +# Examples \ No newline at end of file diff --git a/sparrow-py/docs/index.md b/sparrow-py/docs/source/index.md similarity index 84% rename from sparrow-py/docs/index.md rename to sparrow-py/docs/source/index.md index ec5732a99..14115ef84 100644 --- a/sparrow-py/docs/index.md +++ b/sparrow-py/docs/source/index.md @@ -26,7 +26,7 @@ data.count().run().to_pandas() ``` ## What are "Timestreams"? -A [Timestream](reference/timestream) describes how a value changes over time. In the same way that SQL +A [Timestream](reference/timestream/index) describes how a value changes over time. In the same way that SQL queries transform tables and graph queries transform nodes and edges, Kaskada queries transform Timestreams. @@ -39,13 +39,17 @@ be defined at arbitrary times corresponding to when the events occur. :hidden: quickstart +concepts +examples/index ``` ```{toctree} :caption: Reference :hidden: +:maxdepth: 3 -reference/timestream +reference/timestream/index +reference/windows reference/sources -reference/execution +reference/results ``` \ No newline at end of file diff --git a/sparrow-py/docs/source/quickstart.md b/sparrow-py/docs/source/quickstart.md new file mode 100644 index 000000000..daf85deb5 --- /dev/null +++ b/sparrow-py/docs/source/quickstart.md @@ -0,0 +1,33 @@ +--- +file_format: mystnb +kernelspec: + name: python3 + display_name: Python 3 +mystnb: + execution_mode: cache +--- + +# Quick Start + +```{todo} + +Write the quick start. +``` + +```{code-cell} +import sparrow_py as kt +kt.init_session() +content = "\n".join( + [ + "time,key,m,n", + "1996-12-19T16:39:57-08:00,A,5,10", + "1996-12-19T16:39:58-08:00,B,24,3", + "1996-12-19T16:39:59-08:00,A,17,6", + "1996-12-19T16:40:00-08:00,A,,9", + "1996-12-19T16:40:01-08:00,A,12,", + "1996-12-19T16:40:02-08:00,A,,", + ] +) +source = kt.sources.CsvSource("time", "key", content) +source.run().to_pandas() +``` \ No newline at end of file diff --git a/sparrow-py/docs/source/reference/results.md b/sparrow-py/docs/source/reference/results.md new file mode 100644 index 000000000..934e0441e --- /dev/null +++ b/sparrow-py/docs/source/reference/results.md @@ -0,0 +1,10 @@ +# Results + +```{eval-rst} +.. currentmodule:: sparrow_py + +.. autosummary:: + :toctree: api/ + + Result +``` \ No newline at end of file diff --git a/sparrow-py/docs/source/reference/sources.md b/sparrow-py/docs/source/reference/sources.md new file mode 100644 index 000000000..316a8efbc --- /dev/null +++ b/sparrow-py/docs/source/reference/sources.md @@ -0,0 +1,11 @@ +# Sources + +```{eval-rst} +.. currentmodule:: sparrow_py.sources + +.. autosummary:: + :toctree: api/ + + ArrowSource + CsvSource +``` \ No newline at end of file diff --git a/sparrow-py/docs/source/reference/timestream/aggregation.md b/sparrow-py/docs/source/reference/timestream/aggregation.md new file mode 100644 index 000000000..16b4637b0 --- /dev/null +++ b/sparrow-py/docs/source/reference/timestream/aggregation.md @@ -0,0 +1,22 @@ +# Aggregation + +Timestream aggregations are: + +Cumulative: + They reflect all values up to and including the current time. +Grouped: + They reflect the values for each entity separately. +Windowed: + They reflect the values within a specific [window](../windows.md). + +```{eval-rst} +.. currentmodule:: sparrow_py + +.. autosummary:: + :toctree: api/ + + Timestream.sum + Timestream.first + Timestream.last + Timestream.collect +``` \ No newline at end of file diff --git a/sparrow-py/docs/source/reference/timestream/arithmetic.md b/sparrow-py/docs/source/reference/timestream/arithmetic.md new file mode 100644 index 000000000..2d1af16d6 --- /dev/null +++ b/sparrow-py/docs/source/reference/timestream/arithmetic.md @@ -0,0 +1,18 @@ +# Arithmetic + +```{eval-rst} +.. currentmodule:: sparrow_py + +.. autosummary:: + :toctree: api/ + + Timestream.__add__ + Timestream.__radd__ + Timestream.__sub__ + Timestream.__rsub__ + Timestream.__mul__ + Timestream.__rmul__ + Timestream.__truediv__ + Timestream.__rtruediv__ + Timestream.neg +``` \ No newline at end of file diff --git a/sparrow-py/docs/source/reference/timestream/comparison.md b/sparrow-py/docs/source/reference/timestream/comparison.md new file mode 100644 index 000000000..c6cbebfae --- /dev/null +++ b/sparrow-py/docs/source/reference/timestream/comparison.md @@ -0,0 +1,17 @@ +# Comparison + +Comparison operations produce boolean Timestreams. + +```{eval-rst} +.. currentmodule:: sparrow_py + +.. autosummary:: + :toctree: api/ + + Timestream.eq + Timestream.ne + Timestream.__gt__ + Timestream.__ge__ + Timestream.__lt__ + Timestream.__le__ +``` \ No newline at end of file diff --git a/sparrow-py/docs/source/reference/timestream/execution.md b/sparrow-py/docs/source/reference/timestream/execution.md new file mode 100644 index 000000000..57f3945ff --- /dev/null +++ b/sparrow-py/docs/source/reference/timestream/execution.md @@ -0,0 +1,11 @@ +# Execution + +```{eval-rst} +.. currentmodule:: sparrow_py + +.. autosummary:: + :toctree: api/ + + Timestream.preview + Timestream.run +``` \ No newline at end of file diff --git a/sparrow-py/docs/source/reference/timestream/index.md b/sparrow-py/docs/source/reference/timestream/index.md new file mode 100644 index 000000000..ecc598b9f --- /dev/null +++ b/sparrow-py/docs/source/reference/timestream/index.md @@ -0,0 +1,28 @@ +# Timestream + +```{todo} +- [ ] Expand the `Arg` type alias in timestreams accordingly. +``` + +```{eval-rst} +.. currentmodule:: sparrow_py + +.. autoclass:: Timestream + :members: + :noindex: + :autosummary: + :autosummary-nosignatures: +``` + +```{toctree} +:hidden: +:maxdepth: 3 + +aggregation +arithmetic +comparison +execution +logical +misc +records +``` \ No newline at end of file diff --git a/sparrow-py/docs/source/reference/timestream/logical.md b/sparrow-py/docs/source/reference/timestream/logical.md new file mode 100644 index 000000000..87b58e371 --- /dev/null +++ b/sparrow-py/docs/source/reference/timestream/logical.md @@ -0,0 +1,12 @@ +# Logical + +```{eval-rst} +.. currentmodule:: sparrow_py + +.. autosummary:: + :toctree: api/ + + Timestream.and_ + Timestream.or_ + Timestream.not_ +``` \ No newline at end of file diff --git a/sparrow-py/docs/source/reference/timestream/misc.md b/sparrow-py/docs/source/reference/timestream/misc.md new file mode 100644 index 000000000..e282231c6 --- /dev/null +++ b/sparrow-py/docs/source/reference/timestream/misc.md @@ -0,0 +1,10 @@ +# Miscellaneous + +```{eval-rst} +.. currentmodule:: sparrow_py + +.. autosummary:: + :toctree: api/ + + Timestream.data_type +``` \ No newline at end of file diff --git a/sparrow-py/docs/source/reference/timestream/records.md b/sparrow-py/docs/source/reference/timestream/records.md new file mode 100644 index 000000000..18e472c23 --- /dev/null +++ b/sparrow-py/docs/source/reference/timestream/records.md @@ -0,0 +1,17 @@ +# Records + +Record operations create, extract or manipulate Timestreams of records. +Comparison operations produce boolean Timestreams. + +```{eval-rst} +.. currentmodule:: sparrow_py + +.. autosummary:: + :toctree: api/ + + Timestream.__getitem__ + Timestream.select + Timestream.remove + Timestream.extend + record +``` \ No newline at end of file diff --git a/sparrow-py/docs/source/reference/windows.md b/sparrow-py/docs/source/reference/windows.md new file mode 100644 index 000000000..a5d6f6c86 --- /dev/null +++ b/sparrow-py/docs/source/reference/windows.md @@ -0,0 +1,11 @@ +# Windows + +```{eval-rst} +.. currentmodule:: sparrow_py + +.. autosummary:: + :toctree: api/ + + SinceWindow + SlidingWindow +``` \ No 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pd.DataFrame: diff --git a/sparrow-py/pysrc/sparrow_py/_timestream.py b/sparrow-py/pysrc/sparrow_py/_timestream.py index 1a74b02bc..b6db67f86 100644 --- a/sparrow-py/pysrc/sparrow_py/_timestream.py +++ b/sparrow-py/pysrc/sparrow_py/_timestream.py @@ -357,7 +357,7 @@ def __ge__(self, rhs: Arg) -> Timestream: """ return Timestream._call("gte", self, rhs) - def __and__(self, rhs: Arg) -> Timestream: + def and_(self, rhs: Arg) -> Timestream: """ Create the logical conjunction of this Timestream and `rhs`. @@ -369,13 +369,13 @@ def __and__(self, rhs: Arg) -> Timestream: Returns ------- Timestream - The Timestream resulting from `self & rhs`. + The Timestream resulting from `self and rhs`. """ - return Timestream._call("and", self, rhs) + return Timestream._call("logical_and", self, rhs) - def __or__(self, rhs: Arg) -> Timestream: + def or_(self, rhs: Arg) -> Timestream: """ - Create the logical disjunction of this Timestream nad `rhs`. + Create the logical disjunction of this Timestream and `rhs`. Parameters ---------- @@ -385,9 +385,20 @@ def __or__(self, rhs: Arg) -> Timestream: Returns ------- Timestream - The Timestream resulting from `self | rhs`. + The Timestream resulting from `self or rhs`. """ - return Timestream._call("or", self, rhs) + return Timestream._call("logical_or", self, rhs) + + def not_(self) -> Timestream: + """ + Create the logical negation of this Timestream. + + Returns + ------- + Timestream + The Timestream resulting from `not self`. + """ + return Timestream._call("not", self) def eq(self, other: Arg) -> Timestream: """ @@ -513,18 +524,14 @@ def extend(self, fields: Dict[str, Timestream]) -> Timestream: def neg(self) -> Timestream: """ - Create a Timestream from the logical or numeric negation of self. + Create a Timestream from the numeric negation of self. Returns ------- Timestream - Timestream with the logical or numeric negation of self. + Timestream of the numeric negation of self. """ - data_type = self.data_type - if data_type == pa.bool_(): - return Timestream._call("not", self) - else: - return Timestream._call("neg", self) + return Timestream._call("neg", self) def is_null(self) -> Timestream: """ diff --git a/sparrow-py/pytests/timestream_test.py b/sparrow-py/pytests/timestream_test.py index 98305a5d2..b14d5a47c 100644 --- a/sparrow-py/pytests/timestream_test.py +++ b/sparrow-py/pytests/timestream_test.py @@ -50,6 +50,8 @@ def test_timestream_math(source1) -> None: assert (1 / x).data_type == x.data_type assert (1 + x).data_type == x.data_type + assert (1 + x).neg().data_type == x.data_type + def test_timestream_comparison(source1) -> None: x = source1["x"] @@ -71,6 +73,12 @@ def test_timestream_comparison(source1) -> None: assert x.eq(1).data_type == pa.bool_() assert x.ne(1).data_type == pa.bool_() + a = x > 1 + b = x.eq(1) + assert a.not_().data_type == pa.bool_() + assert a.and_(b).data_type == pa.bool_() + assert a.or_(b).data_type == pa.bool_() + def test_timestream_arithmetic_types(source1) -> None: x = source1["x"]