From 182866a64bf4bdcb035c6cf76703b318b101a95c Mon Sep 17 00:00:00 2001 From: Katarzyna Sikora Date: Tue, 27 Feb 2018 17:54:06 +0100 Subject: [PATCH] version number --- BS_DMR_WGBS.py~ | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/BS_DMR_WGBS.py~ b/BS_DMR_WGBS.py~ index f658862..d382fcc 100755 --- a/BS_DMR_WGBS.py~ +++ b/BS_DMR_WGBS.py~ @@ -39,7 +39,7 @@ def DMR_metilene(ii,sampleInfo,outfile,nthreads,metipath,my_session,logobject): def clean_up_metilene(metilene_out,CpG_stats_out,sampleInfo,outdir,my_session,logobject): - cmd='/package/R-3.3.1/bin/Rscript --no-save --no-restore /data/manke/repository/scripts/DNA_methylation/WGBS_pipe/dev/WGBSpipe.metilene_stats.limma.R ' + outdir + ' ' + metilene_out + ' ' + CpG_stats_out +' ' + sampleInfo + cmd='/package/R-3.3.1/bin/Rscript --no-save --no-restore /data/manke/repository/scripts/DNA_methylation/WGBS_pipe/v1.0.0/WGBSpipe.metilene_stats.limma.R ' + outdir + ' ' + metilene_out + ' ' + CpG_stats_out +' ' + sampleInfo logobject.info(cmd) with open(os.path.join(outdir,"logs","metilene.cleanup.out" ),'w') as stdoutF, open(os.path.join(outdir,"logs","metilene.cleanup.err"),'w') as stderrF: try: