GetFromKEGG

Get data from KEGG online database using jsoup jar

Data Reptile Code

GetDiseasesFromKEGG

Get the Diseases Data From KEGG.

The latest KEGG-Disease Data is 20170314 version ( file path : disease/kegg/Kegg_Diseases_All_Data_20170314)

Data Column

KEGG Disease ID
Name
Description
Category
Gene
Drug
Env factor
Carcinogen
Comment
Marker
Reference
Other DBs

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GetDrugGroupFromKEGG

Get the Drug Group Data From KEGG

Data Column

KEGG DrugGroup ID
Name
Member
Remark
Comment

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GetDrugsFromKEGG

Get the Drugs Data From KEGG

Data Column

KEGG Drug ID
Name
Formula
Exact mass
Mol weight
Other DBs

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Data Process Code

OMIM_to_DrugBank

Get the OMIM-DrungBank associations 

Pipeline

• Get the Original Data From KEGG

    1. Get the Diseases Data
    2. Get the Drugs Data
    3. Get the DrugGroup Data
  

• Extract the Data Of KEGG Data

    1. Get the (disease id - drug ids - omim ids) data  from Diseases Data
    2. Get the (drug id - drugbank id) data from Drugs Data
    3. Get the (druggroup id - drug id) data from DrugGroup Data
    4. Get the OMIM IDs to DrugBank associations data