diff --git a/README.md b/README.md index d77252d..da608fa 100644 --- a/README.md +++ b/README.md @@ -307,6 +307,14 @@ python gimme_taxa.py -h python gimme_taxa.py --help ``` +To use the `gimme_taxa.py` script with `ncbi-genome-download`'s `--taxids` option, +you need to call `gimme_taxa.py` with the `-j` option, like this: + +```bash +gimme_taxa.py -j -o my_taxids.txt Escherichia +ncbi-genome-download --taxids my_taxids.txt bacteria +``` + ## Citing `ncbi-genome-download` You can cite `ncbi-genome-download` via the Zenodo deposit under