adxvx

#!/bin/bash
#
# adxvx
#
# (c) RIKEN 2015. All rights reserved. 
# Author: Keitaro Yamashita
# 
# This software is released under the new BSD License; see LICENSE.
#

# Adxv shortcut for visualizing XDS result
# assuming XDS.INP exists in the same directory as the input file.

infile=${@: -1}
dir=`dirname $infile`
xdsinp=`mktemp 2>/dev/null || mktemp -t mytmp`
sed -e 's/!.*//g' ${dir}/XDS.INP > $xdsinp

wavelength=`egrep -o "X-RAY_WAVELENGTH= *[0-9\.]+" $xdsinp | sed -e "s/X-RAY_WAVELENGTH= *//"`
distance=`egrep -o "DETECTOR_DISTANCE= *[0-9\.\-]+" $xdsinp | sed -e 's/DETECTOR_DISTANCE= *//; s/-//'`
pixelsize=`egrep -o "QX= *[0-9\.]+" $xdsinp | sed -e "s/QX= *//"`
orgx=`egrep -o "ORGX= *[0-9\.]+" $xdsinp | sed -e "s/ORGX= *//"`
orgy=`egrep -o "ORGY= *[0-9\.]+" $xdsinp | sed -e "s/ORGY= *//"`
rm -f $xdsinp

echo adxv -wavelength ${wavelength} -distance ${distance} -pixelsize ${pixelsize} -beam_center_pixels $orgx $orgy $@
adxv -wavelength ${wavelength} -distance ${distance} -pixelsize ${pixelsize} -beam_center_pixels $orgx $orgy $@