README.md

vitessce-human-neocortex-example

Setup

Create the conda environment and install the Python dependencies

conda env create -f environment.yml

Install http-server (with homebrew if using Mac).

Move data files to the data directory

Move CellByFeature_Matrix.csv to data/CellByFeature_Matrix.csv.

Run the notebook

Activate the conda environment, then start JupyterLab and open the process_data_for_vitessce.ipynb Jupyter notebook.

conda activate vitessce-human-neocortex-env

jupyter lab