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config.log
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config.log
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This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by orparapp configure 0.1.0, which was
generated by GNU Autoconf 2.69. Invocation command line was
$ ./configure
## --------- ##
## Platform. ##
## --------- ##
hostname = jinshou
uname -m = x86_64
uname -r = 4.4.0-62-generic
uname -s = Linux
uname -v = #83-Ubuntu SMP Wed Jan 18 14:10:15 UTC 2017
/usr/bin/uname -p = unknown
/bin/uname -X = unknown
/bin/arch = unknown
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown
PATH: /home/kzhou/bin
PATH: /home/kzhou/.local/bin
PATH: .
PATH: /usr/local/sbin
PATH: /usr/local/bin
PATH: /usr/sbin
PATH: /usr/bin
PATH: /sbin
PATH: /bin
PATH: /usr/games
PATH: /usr/local/games
PATH: /snap/bin
PATH: /usr/local/jdk1.8.0_112/bin
PATH: /usr/local/IGV_2.3.90
PATH: /usr/local/texlive/2016/bin/x86_64-linux
## ----------- ##
## Core tests. ##
## ----------- ##
configure:2685: checking for a BSD-compatible install
configure:2753: result: /usr/bin/install -c
configure:2764: checking whether build environment is sane
configure:2819: result: yes
configure:2970: checking for a thread-safe mkdir -p
configure:3009: result: /bin/mkdir -p
configure:3016: checking for gawk
configure:3046: result: no
configure:3016: checking for mawk
configure:3032: found /usr/bin/mawk
configure:3043: result: mawk
configure:3054: checking whether make sets $(MAKE)
configure:3076: result: yes
configure:3105: checking whether make supports nested variables
configure:3122: result: yes
configure:3263: checking for style of include used by make
configure:3291: result: GNU
configure:3362: checking for gcc
configure:3378: found /usr/bin/gcc
configure:3389: result: gcc
configure:3618: checking for C compiler version
configure:3627: gcc --version >&5
gcc (Ubuntu 5.4.0-6ubuntu1~16.04.4) 5.4.0 20160609
Copyright (C) 2015 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
configure:3638: $? = 0
configure:3627: gcc -v >&5
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 5.4.0-6ubuntu1~16.04.4' --with-bugurl=file:///usr/share/doc/gcc-5/README.Bugs --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-5 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-5-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-5-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-5-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 5.4.0 20160609 (Ubuntu 5.4.0-6ubuntu1~16.04.4)
configure:3638: $? = 0
configure:3627: gcc -V >&5
gcc: error: unrecognized command line option '-V'
gcc: fatal error: no input files
compilation terminated.
configure:3638: $? = 1
configure:3627: gcc -qversion >&5
gcc: error: unrecognized command line option '-qversion'
gcc: fatal error: no input files
compilation terminated.
configure:3638: $? = 1
configure:3658: checking whether the C compiler works
configure:3680: gcc conftest.c >&5
configure:3684: $? = 0
configure:3732: result: yes
configure:3735: checking for C compiler default output file name
configure:3737: result: a.out
configure:3743: checking for suffix of executables
configure:3750: gcc -o conftest conftest.c >&5
configure:3754: $? = 0
configure:3776: result:
configure:3798: checking whether we are cross compiling
configure:3806: gcc -o conftest conftest.c >&5
configure:3810: $? = 0
configure:3817: ./conftest
configure:3821: $? = 0
configure:3836: result: no
configure:3841: checking for suffix of object files
configure:3863: gcc -c conftest.c >&5
configure:3867: $? = 0
configure:3888: result: o
configure:3892: checking whether we are using the GNU C compiler
configure:3911: gcc -c conftest.c >&5
configure:3911: $? = 0
configure:3920: result: yes
configure:3929: checking whether gcc accepts -g
configure:3949: gcc -c -g conftest.c >&5
configure:3949: $? = 0
configure:3990: result: yes
configure:4007: checking for gcc option to accept ISO C89
configure:4070: gcc -c -g -O2 conftest.c >&5
configure:4070: $? = 0
configure:4083: result: none needed
configure:4108: checking whether gcc understands -c and -o together
configure:4130: gcc -c conftest.c -o conftest2.o
configure:4133: $? = 0
configure:4130: gcc -c conftest.c -o conftest2.o
configure:4133: $? = 0
configure:4145: result: yes
configure:4164: checking dependency style of gcc
configure:4275: result: gcc3
configure:4340: checking for ar
configure:4356: found /usr/bin/ar
configure:4367: result: ar
configure:4393: checking the archiver (ar) interface
configure:4409: gcc -c -g -O2 conftest.c >&5
configure:4409: $? = 0
configure:4411: ar cru libconftest.a conftest.o >&5
ar: `u' modifier ignored since `D' is the default (see `U')
configure:4414: $? = 0
configure:4442: result: ar
configure:4492: checking build system type
configure:4506: result: x86_64-pc-linux-gnu
configure:4526: checking host system type
configure:4539: result: x86_64-pc-linux-gnu
configure:4580: checking how to print strings
configure:4607: result: printf
configure:4628: checking for a sed that does not truncate output
configure:4692: result: /bin/sed
configure:4710: checking for grep that handles long lines and -e
configure:4768: result: /bin/grep
configure:4773: checking for egrep
configure:4835: result: /bin/grep -E
configure:4840: checking for fgrep
configure:4902: result: /bin/grep -F
configure:4937: checking for ld used by gcc
configure:5004: result: /usr/bin/ld
configure:5011: checking if the linker (/usr/bin/ld) is GNU ld
configure:5026: result: yes
configure:5038: checking for BSD- or MS-compatible name lister (nm)
configure:5092: result: /usr/bin/nm -B
configure:5222: checking the name lister (/usr/bin/nm -B) interface
configure:5229: gcc -c -g -O2 conftest.c >&5
configure:5232: /usr/bin/nm -B "conftest.o"
configure:5235: output
0000000000000000 B some_variable
configure:5242: result: BSD nm
configure:5245: checking whether ln -s works
configure:5249: result: yes
configure:5257: checking the maximum length of command line arguments
configure:5388: result: 1572864
configure:5436: checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format
configure:5476: result: func_convert_file_noop
configure:5483: checking how to convert x86_64-pc-linux-gnu file names to toolchain format
configure:5503: result: func_convert_file_noop
configure:5510: checking for /usr/bin/ld option to reload object files
configure:5517: result: -r
configure:5591: checking for objdump
configure:5607: found /usr/bin/objdump
configure:5618: result: objdump
configure:5650: checking how to recognize dependent libraries
configure:5850: result: pass_all
configure:5935: checking for dlltool
configure:5965: result: no
configure:5995: checking how to associate runtime and link libraries
configure:6022: result: printf %s\n
configure:6146: checking for archiver @FILE support
configure:6163: gcc -c -g -O2 conftest.c >&5
configure:6163: $? = 0
configure:6166: ar cru libconftest.a @conftest.lst >&5
ar: `u' modifier ignored since `D' is the default (see `U')
configure:6169: $? = 0
configure:6174: ar cru libconftest.a @conftest.lst >&5
ar: `u' modifier ignored since `D' is the default (see `U')
ar: conftest.o: No such file or directory
configure:6177: $? = 1
configure:6189: result: @
configure:6247: checking for strip
configure:6263: found /usr/bin/strip
configure:6274: result: strip
configure:6346: checking for ranlib
configure:6362: found /usr/bin/ranlib
configure:6373: result: ranlib
configure:6475: checking command to parse /usr/bin/nm -B output from gcc object
configure:6628: gcc -c -g -O2 conftest.c >&5
configure:6631: $? = 0
configure:6635: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm
configure:6638: $? = 0
configure:6704: gcc -o conftest -g -O2 conftest.c conftstm.o >&5
configure:6707: $? = 0
configure:6745: result: ok
configure:6792: checking for sysroot
configure:6822: result: no
configure:6829: checking for a working dd
configure:6867: result: /bin/dd
configure:6871: checking how to truncate binary pipes
configure:6886: result: /bin/dd bs=4096 count=1
configure:7022: gcc -c -g -O2 conftest.c >&5
configure:7025: $? = 0
configure:7215: checking for mt
configure:7231: found /bin/mt
configure:7242: result: mt
configure:7265: checking if mt is a manifest tool
configure:7271: mt '-?'
configure:7279: result: no
configure:7956: checking how to run the C preprocessor
configure:7987: gcc -E conftest.c
configure:7987: $? = 0
configure:8001: gcc -E conftest.c
conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:8001: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "orparapp"
| #define PACKAGE_TARNAME "orparapp"
| #define PACKAGE_VERSION "0.1.0"
| #define PACKAGE_STRING "orparapp 0.1.0"
| #define PACKAGE_BUGREPORT "[email protected]"
| #define PACKAGE_URL ""
| #define PACKAGE "orparapp"
| #define VERSION "0.1.0"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:8026: result: gcc -E
configure:8046: gcc -E conftest.c
configure:8046: $? = 0
configure:8060: gcc -E conftest.c
conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:8060: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "orparapp"
| #define PACKAGE_TARNAME "orparapp"
| #define PACKAGE_VERSION "0.1.0"
| #define PACKAGE_STRING "orparapp 0.1.0"
| #define PACKAGE_BUGREPORT "[email protected]"
| #define PACKAGE_URL ""
| #define PACKAGE "orparapp"
| #define VERSION "0.1.0"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:8089: checking for ANSI C header files
configure:8109: gcc -c -g -O2 conftest.c >&5
configure:8109: $? = 0
configure:8182: gcc -o conftest -g -O2 conftest.c >&5
configure:8182: $? = 0
configure:8182: ./conftest
configure:8182: $? = 0
configure:8193: result: yes
configure:8206: checking for sys/types.h
configure:8206: gcc -c -g -O2 conftest.c >&5
configure:8206: $? = 0
configure:8206: result: yes
configure:8206: checking for sys/stat.h
configure:8206: gcc -c -g -O2 conftest.c >&5
configure:8206: $? = 0
configure:8206: result: yes
configure:8206: checking for stdlib.h
configure:8206: gcc -c -g -O2 conftest.c >&5
configure:8206: $? = 0
configure:8206: result: yes
configure:8206: checking for string.h
configure:8206: gcc -c -g -O2 conftest.c >&5
configure:8206: $? = 0
configure:8206: result: yes
configure:8206: checking for memory.h
configure:8206: gcc -c -g -O2 conftest.c >&5
configure:8206: $? = 0
configure:8206: result: yes
configure:8206: checking for strings.h
configure:8206: gcc -c -g -O2 conftest.c >&5
configure:8206: $? = 0
configure:8206: result: yes
configure:8206: checking for inttypes.h
configure:8206: gcc -c -g -O2 conftest.c >&5
configure:8206: $? = 0
configure:8206: result: yes
configure:8206: checking for stdint.h
configure:8206: gcc -c -g -O2 conftest.c >&5
configure:8206: $? = 0
configure:8206: result: yes
configure:8206: checking for unistd.h
configure:8206: gcc -c -g -O2 conftest.c >&5
configure:8206: $? = 0
configure:8206: result: yes
configure:8220: checking for dlfcn.h
configure:8220: gcc -c -g -O2 conftest.c >&5
configure:8220: $? = 0
configure:8220: result: yes
configure:8476: checking for objdir
configure:8491: result: .libs
configure:8755: checking if gcc supports -fno-rtti -fno-exceptions
configure:8773: gcc -c -g -O2 -fno-rtti -fno-exceptions conftest.c >&5
cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C
configure:8777: $? = 0
configure:8790: result: no
configure:9148: checking for gcc option to produce PIC
configure:9155: result: -fPIC -DPIC
configure:9163: checking if gcc PIC flag -fPIC -DPIC works
configure:9181: gcc -c -g -O2 -fPIC -DPIC -DPIC conftest.c >&5
configure:9185: $? = 0
configure:9198: result: yes
configure:9227: checking if gcc static flag -static works
configure:9255: result: yes
configure:9270: checking if gcc supports -c -o file.o
configure:9291: gcc -c -g -O2 -o out/conftest2.o conftest.c >&5
configure:9295: $? = 0
configure:9317: result: yes
configure:9325: checking if gcc supports -c -o file.o
configure:9372: result: yes
configure:9405: checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:10668: result: yes
configure:10705: checking whether -lc should be explicitly linked in
configure:10713: gcc -c -g -O2 conftest.c >&5
configure:10716: $? = 0
configure:10731: gcc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1
configure:10734: $? = 0
configure:10748: result: no
configure:10908: checking dynamic linker characteristics
configure:11489: gcc -o conftest -g -O2 -Wl,-rpath -Wl,/foo conftest.c >&5
configure:11489: $? = 0
configure:11738: result: GNU/Linux ld.so
configure:11860: checking how to hardcode library paths into programs
configure:11885: result: immediate
configure:12433: checking whether stripping libraries is possible
configure:12438: result: yes
configure:12473: checking if libtool supports shared libraries
configure:12475: result: yes
configure:12478: checking whether to build shared libraries
configure:12503: result: yes
configure:12506: checking whether to build static libraries
configure:12510: result: yes
configure:12608: checking for g++
configure:12624: found /usr/bin/g++
configure:12635: result: g++
configure:12662: checking for C++ compiler version
configure:12671: g++ --version >&5
g++ (Ubuntu 5.4.0-6ubuntu1~16.04.4) 5.4.0 20160609
Copyright (C) 2015 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
configure:12682: $? = 0
configure:12671: g++ -v >&5
Using built-in specs.
COLLECT_GCC=g++
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 5.4.0-6ubuntu1~16.04.4' --with-bugurl=file:///usr/share/doc/gcc-5/README.Bugs --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-5 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-5-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-5-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-5-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 5.4.0 20160609 (Ubuntu 5.4.0-6ubuntu1~16.04.4)
configure:12682: $? = 0
configure:12671: g++ -V >&5
g++: error: unrecognized command line option '-V'
g++: fatal error: no input files
compilation terminated.
configure:12682: $? = 1
configure:12671: g++ -qversion >&5
g++: error: unrecognized command line option '-qversion'
g++: fatal error: no input files
compilation terminated.
configure:12682: $? = 1
configure:12686: checking whether we are using the GNU C++ compiler
configure:12705: g++ -c conftest.cpp >&5
configure:12705: $? = 0
configure:12714: result: yes
configure:12723: checking whether g++ accepts -g
configure:12743: g++ -c -g conftest.cpp >&5
configure:12743: $? = 0
configure:12784: result: yes
configure:12809: checking dependency style of g++
configure:12920: result: gcc3
configure:12953: checking how to run the C++ preprocessor
configure:12980: g++ -E conftest.cpp
configure:12980: $? = 0
configure:12994: g++ -E conftest.cpp
conftest.cpp:23:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:12994: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "orparapp"
| #define PACKAGE_TARNAME "orparapp"
| #define PACKAGE_VERSION "0.1.0"
| #define PACKAGE_STRING "orparapp 0.1.0"
| #define PACKAGE_BUGREPORT "[email protected]"
| #define PACKAGE_URL ""
| #define PACKAGE "orparapp"
| #define VERSION "0.1.0"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:13019: result: g++ -E
configure:13039: g++ -E conftest.cpp
configure:13039: $? = 0
configure:13053: g++ -E conftest.cpp
conftest.cpp:23:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:13053: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "orparapp"
| #define PACKAGE_TARNAME "orparapp"
| #define PACKAGE_VERSION "0.1.0"
| #define PACKAGE_STRING "orparapp 0.1.0"
| #define PACKAGE_BUGREPORT "[email protected]"
| #define PACKAGE_URL ""
| #define PACKAGE "orparapp"
| #define VERSION "0.1.0"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:13215: checking for ld used by g++
configure:13282: result: /usr/bin/ld -m elf_x86_64
configure:13289: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld
configure:13304: result: yes
configure:13359: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:14432: result: yes
configure:14468: g++ -c -g -O2 conftest.cpp >&5
configure:14471: $? = 0
configure:14952: checking for g++ option to produce PIC
configure:14959: result: -fPIC -DPIC
configure:14967: checking if g++ PIC flag -fPIC -DPIC works
configure:14985: g++ -c -g -O2 -fPIC -DPIC -DPIC conftest.cpp >&5
configure:14989: $? = 0
configure:15002: result: yes
configure:15025: checking if g++ static flag -static works
configure:15053: result: yes
configure:15065: checking if g++ supports -c -o file.o
configure:15086: g++ -c -g -O2 -o out/conftest2.o conftest.cpp >&5
configure:15090: $? = 0
configure:15112: result: yes
configure:15117: checking if g++ supports -c -o file.o
configure:15164: result: yes
configure:15194: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:15237: result: yes
configure:15378: checking dynamic linker characteristics
configure:16135: result: GNU/Linux ld.so
configure:16200: checking how to hardcode library paths into programs
configure:16225: result: immediate
configure:16313: checking for gcc
configure:16340: result: gcc
configure:16569: checking for C compiler version
configure:16578: gcc --version >&5
gcc (Ubuntu 5.4.0-6ubuntu1~16.04.4) 5.4.0 20160609
Copyright (C) 2015 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
configure:16589: $? = 0
configure:16578: gcc -v >&5
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 5.4.0-6ubuntu1~16.04.4' --with-bugurl=file:///usr/share/doc/gcc-5/README.Bugs --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-5 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-5-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-5-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-5-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 5.4.0 20160609 (Ubuntu 5.4.0-6ubuntu1~16.04.4)
configure:16589: $? = 0
configure:16578: gcc -V >&5
gcc: error: unrecognized command line option '-V'
gcc: fatal error: no input files
compilation terminated.
configure:16589: $? = 1
configure:16578: gcc -qversion >&5
gcc: error: unrecognized command line option '-qversion'
gcc: fatal error: no input files
compilation terminated.
configure:16589: $? = 1
configure:16593: checking whether we are using the GNU C compiler
configure:16621: result: yes
configure:16630: checking whether gcc accepts -g
configure:16691: result: yes
configure:16708: checking for gcc option to accept ISO C89
configure:16784: result: none needed
configure:16809: checking whether gcc understands -c and -o together
configure:16846: result: yes
configure:16865: checking dependency style of gcc
configure:16976: result: gcc3
configure:17013: checking whether g++ supports C++11 features by default
configure:17307: g++ -c -g -O2 conftest.cpp >&5
conftest.cpp:34:2: error: #error "This is not a C++11 compiler"
#error "This is not a C++11 compiler"
^
configure:17307: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "orparapp"
| #define PACKAGE_TARNAME "orparapp"
| #define PACKAGE_VERSION "0.1.0"
| #define PACKAGE_STRING "orparapp 0.1.0"
| #define PACKAGE_BUGREPORT "[email protected]"
| #define PACKAGE_URL ""
| #define PACKAGE "orparapp"
| #define VERSION "0.1.0"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
|
|
| // If the compiler admits that it is not ready for C++11, why torture it?
| // Hopefully, this will speed up the test.
|
| #ifndef __cplusplus
|
| #error "This is not a C++ compiler"
|
| #elif __cplusplus < 201103L
|
| #error "This is not a C++11 compiler"
|
| #else
|
| namespace cxx11
| {
|
| namespace test_static_assert
| {
|
| template <typename T>
| struct check
| {
| static_assert(sizeof(int) <= sizeof(T), "not big enough");
| };
|
| }
|
| namespace test_final_override
| {
|
| struct Base
| {
| virtual void f() {}
| };
|
| struct Derived : public Base
| {
| virtual void f() override {}
| };
|
| }
|
| namespace test_double_right_angle_brackets
| {
|
| template < typename T >
| struct check {};
|
| typedef check<void> single_type;
| typedef check<check<void>> double_type;
| typedef check<check<check<void>>> triple_type;
| typedef check<check<check<check<void>>>> quadruple_type;
|
| }
|
| namespace test_decltype
| {
|
| int
| f()
| {
| int a = 1;
| decltype(a) b = 2;
| return a + b;
| }
|
| }
|
| namespace test_type_deduction
| {
|
| template < typename T1, typename T2 >
| struct is_same
| {
| static const bool value = false;
| };
|
| template < typename T >
| struct is_same<T, T>
| {
| static const bool value = true;
| };
|
| template < typename T1, typename T2 >
| auto
| add(T1 a1, T2 a2) -> decltype(a1 + a2)
| {
| return a1 + a2;
| }
|
| int
| test(const int c, volatile int v)
| {
| static_assert(is_same<int, decltype(0)>::value == true, "");
| static_assert(is_same<int, decltype(c)>::value == false, "");
| static_assert(is_same<int, decltype(v)>::value == false, "");
| auto ac = c;
| auto av = v;
| auto sumi = ac + av + 'x';
| auto sumf = ac + av + 1.0;
| static_assert(is_same<int, decltype(ac)>::value == true, "");
| static_assert(is_same<int, decltype(av)>::value == true, "");
| static_assert(is_same<int, decltype(sumi)>::value == true, "");
| static_assert(is_same<int, decltype(sumf)>::value == false, "");
| static_assert(is_same<int, decltype(add(c, v))>::value == true, "");
| return (sumf > 0.0) ? sumi : add(c, v);
| }
|
| }
|
| namespace test_noexcept
| {
|
| int f() { return 0; }
| int g() noexcept { return 0; }
|
| static_assert(noexcept(f()) == false, "");
| static_assert(noexcept(g()) == true, "");
|
| }
|
| namespace test_constexpr
| {
|
| template < typename CharT >
| unsigned long constexpr
| strlen_c_r(const CharT *const s, const unsigned long acc) noexcept
| {
| return *s ? strlen_c_r(s + 1, acc + 1) : acc;
| }
|
| template < typename CharT >
| unsigned long constexpr
| strlen_c(const CharT *const s) noexcept
| {
| return strlen_c_r(s, 0UL);
| }
|
| static_assert(strlen_c("") == 0UL, "");
| static_assert(strlen_c("1") == 1UL, "");
| static_assert(strlen_c("example") == 7UL, "");
| static_assert(strlen_c("another\0example") == 7UL, "");
|
| }
|
| namespace test_rvalue_references
| {
|
| template < int N >
| struct answer
| {
| static constexpr int value = N;
| };
|
| answer<1> f(int&) { return answer<1>(); }
| answer<2> f(const int&) { return answer<2>(); }
| answer<3> f(int&&) { return answer<3>(); }
|
| void
| test()
| {
| int i = 0;
| const int c = 0;
| static_assert(decltype(f(i))::value == 1, "");
| static_assert(decltype(f(c))::value == 2, "");
| static_assert(decltype(f(0))::value == 3, "");
| }
|
| }
|
| namespace test_uniform_initialization
| {
|
| struct test
| {
| static const int zero {};
| static const int one {1};
| };
|
| static_assert(test::zero == 0, "");
| static_assert(test::one == 1, "");
|
| }
|
| namespace test_lambdas
| {
|
| void
| test1()
| {
| auto lambda1 = [](){};
| auto lambda2 = lambda1;
| lambda1();
| lambda2();
| }
|
| int
| test2()
| {
| auto a = [](int i, int j){ return i + j; }(1, 2);
| auto b = []() -> int { return '0'; }();
| auto c = [=](){ return a + b; }();
| auto d = [&](){ return c; }();
| auto e = [a, &b](int x) mutable {
| const auto identity = [](int y){ return y; };
| for (auto i = 0; i < a; ++i)
| a += b--;
| return x + identity(a + b);
| }(0);
| return a + b + c + d + e;
| }
|
| int
| test3()
| {
| const auto nullary = [](){ return 0; };
| const auto unary = [](int x){ return x; };
| using nullary_t = decltype(nullary);
| using unary_t = decltype(unary);
| const auto higher1st = [](nullary_t f){ return f(); };
| const auto higher2nd = [unary](nullary_t f1){
| return [unary, f1](unary_t f2){ return f2(unary(f1())); };
| };
| return higher1st(nullary) + higher2nd(nullary)(unary);
| }
|
| }
|
| namespace test_variadic_templates
| {
|
| template <int...>
| struct sum;
|
| template <int N0, int... N1toN>
| struct sum<N0, N1toN...>
| {
| static constexpr auto value = N0 + sum<N1toN...>::value;
| };
|
| template <>
| struct sum<>
| {
| static constexpr auto value = 0;
| };
|
| static_assert(sum<>::value == 0, "");
| static_assert(sum<1>::value == 1, "");
| static_assert(sum<23>::value == 23, "");
| static_assert(sum<1, 2>::value == 3, "");
| static_assert(sum<5, 5, 11>::value == 21, "");
| static_assert(sum<2, 3, 5, 7, 11, 13>::value == 41, "");
|
| }
|
| // http://stackoverflow.com/questions/13728184/template-aliases-and-sfinae
| // Clang 3.1 fails with headers of libstd++ 4.8.3 when using std::function
| // because of this.
| namespace test_template_alias_sfinae
| {
|
| struct foo {};
|
| template<typename T>
| using member = typename T::member_type;
|
| template<typename T>
| void func(...) {}
|
| template<typename T>
| void func(member<T>*) {}
|
| void test();
|
| void test() { func<foo>(0); }
|
| }
|
| } // namespace cxx11
|
| #endif // __cplusplus >= 201103L
|
|
|
configure:17314: result: no
configure:17326: checking whether g++ supports C++11 features with -std=c++11
configure:17622: g++ -std=c++11 -c -g -O2 conftest.cpp >&5
configure:17622: $? = 0
configure:17631: result: yes
configure:17870: checking whether gcc is Clang
configure:17895: result: no
configure:18018: checking whether pthreads work with -pthread
configure:18112: gcc -o conftest -g -O2 -pthread -L/usr/lib/x86_64-linux-gnu conftest.c -lpthread >&5
configure:18112: $? = 0
configure:18121: result: yes
configure:18140: checking for joinable pthread attribute
configure:18158: gcc -o conftest -g -O2 -pthread -L/usr/lib/x86_64-linux-gnu conftest.c -lpthread >&5
configure:18158: $? = 0
configure:18166: result: PTHREAD_CREATE_JOINABLE
configure:18180: checking whether more special flags are required for pthreads
configure:18193: result: no
configure:18201: checking for PTHREAD_PRIO_INHERIT
configure:18217: gcc -o conftest -g -O2 -pthread -L/usr/lib/x86_64-linux-gnu conftest.c -lpthread >&5
configure:18217: $? = 0
configure:18226: result: yes
configure:18370: g++ -std=c++11 -o conftest -I/usr/local/include -g -O2 -L/usr/local/lib conftest.cpp -lgtest -lgtest_main -lgmock -lgmock_main -lpthread >&5
configure:18370: $? = 0
configure:18413: checking api/BamReader.h usability
configure:18413: g++ -std=c++11 -c -I/usr/local/include/bamtools -g -O2 conftest.cpp >&5
configure:18413: $? = 0
configure:18413: result: yes
configure:18413: checking api/BamReader.h presence
configure:18413: g++ -E -std=c++11 conftest.cpp
conftest.cpp:26:27: fatal error: api/BamReader.h: No such file or directory
compilation terminated.
configure:18413: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "orparapp"
| #define PACKAGE_TARNAME "orparapp"
| #define PACKAGE_VERSION "0.1.0"
| #define PACKAGE_STRING "orparapp 0.1.0"
| #define PACKAGE_BUGREPORT "[email protected]"
| #define PACKAGE_URL ""
| #define PACKAGE "orparapp"
| #define VERSION "0.1.0"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_CXX11 1
| #define HAVE_PTHREAD_PRIO_INHERIT 1
| #define HAVE_PTHREAD 1
| /* end confdefs.h. */
| #include <api/BamReader.h>
configure:18413: result: no
configure:18413: WARNING: api/BamReader.h: accepted by the compiler, rejected by the preprocessor!
configure:18413: WARNING: api/BamReader.h: proceeding with the compiler's result
configure:18413: checking for api/BamReader.h
configure:18413: result: yes
configure:18436: g++ -std=c++11 -o conftest -I/usr/local/include/bamtools -g -O2 -L/usr/local/lib/bamtools conftest.cpp -lbamtools >&5
configure:18436: $? = 0
configure:18485: g++ -std=c++11 -o conftest -I/usr/local/include/boost -g -O2 -L/usr/local/lib conftest.cpp -lboost_program_options >&5
configure:18485: $? = 0
configure:18499: found boost
configure:18523: checking bioseq.h usability
configure:18523: g++ -std=c++11 -c -I/usr/local/include/orpara -g -O2 conftest.cpp >&5
configure:18523: $? = 0
configure:18523: result: yes
configure:18523: checking bioseq.h presence
configure:18523: g++ -E -std=c++11 conftest.cpp
conftest.cpp:27:20: fatal error: bioseq.h: No such file or directory
compilation terminated.
configure:18523: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "orparapp"
| #define PACKAGE_TARNAME "orparapp"
| #define PACKAGE_VERSION "0.1.0"
| #define PACKAGE_STRING "orparapp 0.1.0"
| #define PACKAGE_BUGREPORT "[email protected]"
| #define PACKAGE_URL ""
| #define PACKAGE "orparapp"
| #define VERSION "0.1.0"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_CXX11 1
| #define HAVE_PTHREAD_PRIO_INHERIT 1
| #define HAVE_PTHREAD 1
| #define HAVE_API_BAMREADER_H 1
| /* end confdefs.h. */
| #include <bioseq.h>
configure:18523: result: no
configure:18523: WARNING: bioseq.h: accepted by the compiler, rejected by the preprocessor!
configure:18523: WARNING: bioseq.h: proceeding with the compiler's result
configure:18523: checking for bioseq.h
configure:18523: result: yes
configure:18546: g++ -std=c++11 -o conftest -I/usr/local/include/orpara -g -O2 -L/usr/local/lib conftest.cpp >&5
configure:18546: $? = 0
configure:18590: g++ -std=c++11 -o conftest -I/usr/local/include -g -O2 -L/usr/local/lib conftest.cpp -lplotter -lXaw -lXmu -lXt -lSM -lICE -lXext -lX11 -lpng -lz -lm >&5
configure:18590: $? = 0
configure:18613: checking for string.h
configure:18613: result: yes
configure:18625: checking for stdbool.h that conforms to C99
configure:18692: gcc -c -g -O2 conftest.c >&5
configure:18692: $? = 0
configure:18699: result: yes
configure:18701: checking for _Bool
configure:18701: gcc -c -g -O2 conftest.c >&5
configure:18701: $? = 0
configure:18701: gcc -c -g -O2 conftest.c >&5
conftest.c: In function 'main':
conftest.c:65:20: error: expected expression before ')' token
if (sizeof ((_Bool)))
^
configure:18701: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "orparapp"
| #define PACKAGE_TARNAME "orparapp"
| #define PACKAGE_VERSION "0.1.0"
| #define PACKAGE_STRING "orparapp 0.1.0"
| #define PACKAGE_BUGREPORT "[email protected]"
| #define PACKAGE_URL ""
| #define PACKAGE "orparapp"
| #define VERSION "0.1.0"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_CXX11 1
| #define HAVE_PTHREAD_PRIO_INHERIT 1
| #define HAVE_PTHREAD 1
| #define HAVE_API_BAMREADER_H 1