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cluster_solo.json
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cluster_solo.json
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{
"__default__" :
{
"mem" : 8000,
"n" : 1,
"tasks" : 1,
"name" : "{rule}-{wildcards}",
"logfile": "log/{rule}-{wildcards}.out",
"partition": "broadwl"
},
"fastqc" :
{
"mem" : 8000
},
"align_human" :
{
"mem": 48000,
"tasks": 20
},
"align_chimp" :
{
"mem": 48000,
"tasks": 8
},
"run_demuxlet_human" :
{
"mem": 32000,
"tasks": 1,
"partition": "gilad"
},
"run_demuxlet_chimp" :
{
"mem": 32000,
"tasks": 1
},
"build_chimp_vcf_pileup" :
{
"mem": 32000,
"tasks": 8
},
"make_popscle_bam_human" :
{
"mem": 32000,
"tasks": 8
},
"make_popscle_bam_chimp" :
{
"mem": 32000,
"tasks": 1
},
"human_filtered_bam" :
{
"mem": 32000,
"tasks": 8
},
"chimp_filtered_bam" :
{
"mem": 32000,
"tasks": 1
},
"build_human_vcf_pileup" :
{
"mem": 32000,
"tasks": 1
},
"run_molinfo_human" :
{
"mem": 48000,
"partition": "broadwl",
"tasks": 1
},
"run_molinfo_chimp" :
{
"mem": 48000,
"partition": "broadwl",
"tasks": 1
},
"assign_species" :
{
"mem": 16000,
"tasks": 1
},
"render_report" :
{
"mem": 32000,
"tasks": 4
}
}