TileDB cppcheck log
Checking core/src/array/array.cc...
Checking core/src/array/array_iterator.cc...
Checking core/src/array/array_read_state.cc...
Checking core/src/array/array_schema.cc...
Checking core/src/c_api/c_api.cc...
Checking core/src/fragment/book_keeping.cc...
Checking core/src/fragment/fragment.cc...
Checking core/src/fragment/read_state.cc...
Checking core/src/array/array_iterator.cc: VERBOSE=1...
Checking core/src/fragment/fragment.cc: VERBOSE=1...
[core/src/array/array.cc:281]: (error) Memory leak: buffers
[core/src/array/array.cc:281]: (error) Memory leak: buffer_sizes
Checking core/src/array/array.cc: GNU_PARALLEL...
Checking core/src/fragment/book_keeping.cc: VERBOSE=1...
Checking core/src/c_api/c_api.cc: VERBOSE=1...
Checking core/src/fragment/fragment.cc: VERBOSE=2...
Checking core/src/array/array_iterator.cc: VERBOSE=2...
Checking core/src/array/array.cc: VERBOSE=1...
[core/src/array/array_read_state.cc:656]: (error) Uninitialized variable: cell_size_var
[core/src/array/array_read_state.cc:661]: (error) Uninitialized variable: cell_size_var
Checking core/src/array/array_read_state.cc: VERBOSE=1...
[core/src/fragment/read_state.cc:2002]: (error) Common realloc mistake: 'tile_compressed_' nulled but not freed upon failure
[core/src/fragment/read_state.cc:955]: (error) Memory leak: mbr_tile_overlap_subarray
1/58 files checked 1% done
Checking core/src/fragment/write_state.cc...
2/58 files checked 3% done
Checking core/src/metadata/metadata.cc...
Checking core/src/fragment/read_state.cc: VERBOSE=1...
[core/src/array/array_schema.cc:1720]: (error) Uninitialized variable: size
Checking core/src/array/array_schema.cc: VERBOSE=1...
Checking core/src/fragment/book_keeping.cc: VERBOSE=2...
Checking core/src/array/array.cc: VERBOSE=2...
Checking core/src/c_api/c_api.cc: VERBOSE=2...
[core/src/metadata/metadata.cc:329]: (error) Common realloc mistake: 'keys_offsets' nulled but not freed upon failure
Checking core/src/metadata/metadata.cc: VERBOSE=1...
3/58 files checked 6% done
Checking core/src/metadata/metadata_iterator.cc...
4/58 files checked 11% done
Checking core/src/misc/hilbert_curve.cc...
5/58 files checked 12% done
Checking core/src/misc/utils.cc...
Checking core/src/array/array_read_state.cc: VERBOSE=2...
Checking core/src/metadata/metadata.cc: VERBOSE=2...
6/58 files checked 18% done
Checking core/src/storage_manager/storage_manager.cc...
[core/src/fragment/write_state.cc:252]: (error) Common realloc mistake: 'tile_compressed_' nulled but not freed upon failure
[core/src/fragment/write_state.cc:311]: (error) Common realloc mistake: 'tile_compressed_' nulled but not freed upon failure
Checking core/src/metadata/metadata_iterator.cc: VERBOSE=1...
Checking core/src/fragment/read_state.cc: VERBOSE=2...
Checking core/src/fragment/write_state.cc: GNU_PARALLEL...
Checking core/src/misc/utils.cc: VERBOSE=1...
7/58 files checked 20% done
Checking examples/src/tiledb_array_consolidate.cc...
8/58 files checked 21% done
Checking examples/src/tiledb_array_create_dense_A.cc...
Checking core/src/metadata/metadata_iterator.cc: VERBOSE=2...
Checking core/src/array/array_schema.cc: VERBOSE=2...
9/58 files checked 21% done
Checking examples/src/tiledb_array_create_dense_var_A.cc...
10/58 files checked 21% done
Checking examples/src/tiledb_array_create_sparse_A.cc...
11/58 files checked 22% done
Checking examples/src/tiledb_array_create_sparse_var_A.cc...
12/58 files checked 22% done
Checking examples/src/tiledb_array_get_schema_dense_B.cc...
Checking core/src/misc/utils.cc: VERBOSE=2...
13/58 files checked 23% done
Checking examples/src/tiledb_array_iterator_read_dense_B.cc...
14/58 files checked 34% done
Checking examples/src/tiledb_array_iterator_read_sparse_B.cc...
[examples/src/tiledb_array_iterator_read_dense_B.cc:49]: (error) Uninitialized variable: b
15/58 files checked 34% done
Checking examples/src/tiledb_array_load_schema_sparse_B.cc...
16/58 files checked 35% done
Checking examples/src/tiledb_array_read_dense_A.cc...
[examples/src/tiledb_array_iterator_read_sparse_B.cc:49]: (error) Uninitialized variable: b
17/58 files checked 35% done
Checking examples/src/tiledb_array_read_dense_var_A.cc...
Checking core/src/storage_manager/storage_manager.cc: VERBOSE=1...
18/58 files checked 35% done
19/58 files checked 36% done
Checking examples/src/tiledb_array_read_sparse_A.cc...
Checking examples/src/tiledb_array_read_sparse_var_A.cc...
20/58 files checked 37% done
Checking examples/src/tiledb_array_update_create_dense_B.cc...
21/58 files checked 37% done
Checking examples/src/tiledb_array_update_create_sparse_B.cc...
22/58 files checked 37% done
Checking examples/src/tiledb_array_update_dense_A.cc...
23/58 files checked 38% done
Checking examples/src/tiledb_array_update_read_dense_B.cc...
24/58 files checked 38% done
Checking examples/src/tiledb_array_update_read_sparse_B.cc...
25/58 files checked 38% done
Checking examples/src/tiledb_array_update_write_dense_B_1.cc...
26/58 files checked 39% done
Checking examples/src/tiledb_array_update_write_dense_B_2.cc...
27/58 files checked 43% done
Checking examples/src/tiledb_array_update_write_dense_B_3.cc...
28/58 files checked 44% done
Checking examples/src/tiledb_array_update_write_sparse_B_1.cc...
29/58 files checked 44% done
Checking examples/src/tiledb_array_update_write_sparse_B_2.cc...
30/58 files checked 44% done
Checking examples/src/tiledb_array_write_dense_A.cc...
31/58 files checked 45% done
Checking examples/src/tiledb_array_write_dense_var_A.cc...
32/58 files checked 45% done
Checking examples/src/tiledb_array_write_sparse_A.cc...
33/58 files checked 45% done
Checking examples/src/tiledb_array_write_sparse_unsorted_A.cc...
34/58 files checked 46% done
Checking examples/src/tiledb_array_write_sparse_unsorted_var_A.cc...
35/58 files checked 46% done
Checking examples/src/tiledb_array_write_sparse_var_A.cc...
Checking core/src/fragment/write_state.cc: VERBOSE=1...
36/58 files checked 46% done
Checking examples/src/tiledb_clear.cc...
37/58 files checked 47% done
Checking examples/src/tiledb_delete.cc...
38/58 files checked 47% done
Checking examples/src/tiledb_group_create.cc...
Checking core/src/fragment/read_state.cc: _TILEDB_USE_MMAP...
39/58 files checked 47% done
Checking examples/src/tiledb_ls.cc...
40/58 files checked 47% done
41/58 files checked 47% done
Checking examples/src/tiledb_ls_workspaces.cc...
Checking examples/src/tiledb_metadata_consolidate.cc...
42/58 files checked 48% done
Checking examples/src/tiledb_metadata_create.cc...
43/58 files checked 48% done
Checking examples/src/tiledb_metadata_iterator_read.cc...
44/58 files checked 48% done
Checking examples/src/tiledb_metadata_load_schema.cc...
45/58 files checked 48% done
Checking examples/src/tiledb_metadata_read.cc...
46/58 files checked 48% done
Checking examples/src/tiledb_metadata_write.cc...
47/58 files checked 49% done
Checking examples/src/tiledb_move.cc...
48/58 files checked 49% done
Checking examples/src/tiledb_workspace_create.cc...
49/58 files checked 49% done
Checking test/src/array/array_schema_spec.cc...
50/58 files checked 49% done
Checking core/src/storage_manager/storage_manager.cc: VERBOSE=2...
Checking test/src/c_api/c_api_spec.cc...
51/58 files checked 49% done
52/58 files checked 50% done
53/58 files checked 51% done
54/58 files checked 63% done
55/58 files checked 65% done
56/58 files checked 74% done
Checking core/src/fragment/write_state.cc: VERBOSE=2...
57/58 files checked 88% done
58/58 files checked 100% done
GenomicsDB cppcheck log
Checking example/src/create_tiledb_workspace.cc...
Checking example/src/example_ga4gh_scan_operator.cc...
Checking example/src/example_libtiledb_variant_driver.cc...
Checking example/src/gt_example_query_processor.cc...
Checking example/src/gt_mpi_gather.cc...
Checking example/src/gt_profile_query_processor.cc...
Checking example/src/gt_verifier.cc...
Checking example/src/vcf2tiledb.cc...
Checking example/src/vcf_histogram.cc...
Checking example/src/vcfdiff.cc...
Checking src/genomicsdb/query_variants.cc...
Checking src/genomicsdb/variant.cc...
Checking src/genomicsdb/variant_array_schema.cc...
Checking src/genomicsdb/variant_cell.cc...
Checking src/genomicsdb/variant_field_data.cc...
Checking src/genomicsdb/variant_field_handler.cc...
1/33 files checked 0% done
Checking src/genomicsdb/variant_query_config.cc...
Checking example/src/gt_verifier.cc: HTSDIR...
Checking src/genomicsdb/variant_field_data.cc: DO_PROFILING...
Checking src/genomicsdb/variant_array_schema.cc: DO_PROFILING...
Checking example/src/vcfdiff.cc: DO_PROFILING...
Checking example/src/vcfdiff.cc: HTSDIR...
Checking example/src/vcfdiff.cc: NDEBUG;_MSC_VER...
Checking src/genomicsdb/variant_cell.cc: DEBUG...
Checking example/src/vcfdiff.cc: RAPIDJSON_DOXYGEN_RUNNING...
Checking example/src/gt_mpi_gather.cc: DEBUG...
Checking example/src/vcf2tiledb.cc: DEBUG...
Checking example/src/gt_mpi_gather.cc: DO_PROFILING...
Checking example/src/vcf_histogram.cc: DEBUG...
Checking example/src/vcf2tiledb.cc: DO_PROFILING...
Checking example/src/vcf_histogram.cc: DO_PROFILING...
Checking src/genomicsdb/variant_field_data.cc: HTSDIR...
Checking example/src/gt_mpi_gather.cc: DUPLICATE_CELL_AT_END...
Checking example/src/gt_verifier.cc: NDEBUG...
Checking src/genomicsdb/variant_array_schema.cc: HTSDIR...
Checking example/src/vcf2tiledb.cc: DUPLICATE_CELL_AT_END...
Checking example/src/vcf_histogram.cc: DUPLICATE_CELL_AT_END...
Checking example/src/gt_mpi_gather.cc: HTSDIR...
Checking example/src/vcf2tiledb.cc: HTSDIR...
Checking example/src/vcf_histogram.cc: HTSDIR...
Checking example/src/gt_mpi_gather.cc: NDEBUG...
Checking example/src/vcf2tiledb.cc: NDEBUG;_MSC_VER...
Checking example/src/vcf_histogram.cc: NDEBUG;_MSC_VER...
Checking example/src/gt_mpi_gather.cc: NDEBUG;_MSC_VER...
Checking example/src/vcf2tiledb.cc: RAPIDJSON_DOXYGEN_RUNNING...
Checking example/src/vcf_histogram.cc: RAPIDJSON_DOXYGEN_RUNNING...
Checking example/src/gt_verifier.cc: __clang__...
Checking example/src/gt_mpi_gather.cc: RAPIDJSON_DOXYGEN_RUNNING...
Checking example/src/gt_profile_query_processor.cc: DEBUG...
Checking example/src/example_ga4gh_scan_operator.cc: DEBUG...
Checking example/src/gt_verifier.cc: __clang__;__has_attribute...
Checking example/src/example_libtiledb_variant_driver.cc: DEBUG...
Checking src/genomicsdb/variant_field_handler.cc: DO_PROFILING...
Checking src/genomicsdb/variant_query_config.cc: DEBUG...
Checking src/genomicsdb/variant_cell.cc: DO_PROFILING...
Checking example/src/gt_example_query_processor.cc: DEBUG...
Checking src/genomicsdb/variant.cc: DEBUG...
2/33 files checked 1% done
Checking src/genomicsdb/variant_storage_manager.cc...
Checking src/genomicsdb/query_variants.cc: DEBUG...
Checking src/genomicsdb/variant_field_data.cc: __clang__...
Checking src/genomicsdb/variant_array_schema.cc: __clang__...
Checking src/genomicsdb/variant_cell.cc: HTSDIR...
Checking src/genomicsdb/variant_field_data.cc: __clang__;__has_attribute...
Checking src/genomicsdb/variant_array_schema.cc: __clang__;__has_attribute...
Checking src/genomicsdb/variant_storage_manager.cc: DEBUG...
Checking example/src/example_ga4gh_scan_operator.cc: DO_PROFILING...
Checking example/src/gt_profile_query_processor.cc: DO_PROFILING...
Checking src/genomicsdb/variant_query_config.cc: DO_PROFILING...
Checking example/src/example_libtiledb_variant_driver.cc: DO_PROFILING...
[dependencies/RapidJSON/include/rapidjson/internal/meta.h:125]: (error) syntax error
Checking src/genomicsdb/variant_field_handler.cc: HTSDIR...
3/33 files checked 1% done
Checking src/loader/load_operators.cc...
4/33 files checked 2% done
Checking src/loader/tiledb_loader.cc...
Checking example/src/gt_example_query_processor.cc: DO_PROFILING...
Checking src/genomicsdb/variant.cc: DO_PROFILING...
Checking src/genomicsdb/variant_storage_manager.cc: DO_PROFILING...
Checking src/genomicsdb/variant_cell.cc: __clang__...
Checking src/genomicsdb/query_variants.cc: DO_PROFILING...
Checking src/loader/load_operators.cc: DEBUG...
Checking src/loader/load_operators.cc: DO_PROFILING...
Checking src/loader/load_operators.cc: DO_PROFILING;HTSDIR...
Checking src/loader/tiledb_loader.cc: DEBUG...
Checking example/src/example_ga4gh_scan_operator.cc: DUPLICATE_CELL_AT_END...
Checking src/loader/tiledb_loader.cc: DO_PROFILING...
Checking src/genomicsdb/variant_storage_manager.cc: HTSDIR...
Checking src/loader/load_operators.cc: DUPLICATE_CELL_AT_END...
Checking src/loader/tiledb_loader.cc: DUPLICATE_CELL_AT_END...
Checking example/src/gt_profile_query_processor.cc: DUPLICATE_CELL_AT_END...
Checking src/loader/load_operators.cc: HTSDIR...
Checking src/loader/tiledb_loader.cc: HTSDIR...
Checking src/genomicsdb/variant_query_config.cc: DUPLICATE_CELL_AT_END...
Checking src/loader/load_operators.cc: HTSDIR;NDEBUG...
Checking example/src/example_libtiledb_variant_driver.cc: DUPLICATE_CELL_AT_END...
Checking src/loader/tiledb_loader.cc: HTSDIR;PRODUCE_CSV_CELLS...
Checking src/loader/load_operators.cc: NDEBUG;_MSC_VER...
Checking src/loader/load_operators.cc: RAPIDJSON_DOXYGEN_RUNNING...
Checking src/loader/tiledb_loader.cc: NDEBUG;_MSC_VER...
Checking src/loader/tiledb_loader.cc: RAPIDJSON_DOXYGEN_RUNNING...
Checking src/genomicsdb/variant_cell.cc: __clang__;__has_attribute...
Checking example/src/gt_example_query_processor.cc: DUPLICATE_CELL_AT_END...
Checking src/genomicsdb/variant.cc: DUPLICATE_CELL_AT_END...
[dependencies/RapidJSON/include/rapidjson/internal/biginteger.h:37]: (error) Array 'digits_[-1]' accessed at index 0, which is out of bounds.
[dependencies/RapidJSON/include/rapidjson/internal/biginteger.h:42]: (error) Array 'digits_[-1]' accessed at index 0, which is out of bounds.
[dependencies/RapidJSON/include/rapidjson/internal/biginteger.h:65]: (error) Array 'digits_[-1]' accessed at index 0, which is out of bounds.
[dependencies/RapidJSON/include/rapidjson/internal/biginteger.h:71]: (error) Array 'digits_[-1]' accessed at index 0, which is out of bounds.
[dependencies/RapidJSON/include/rapidjson/internal/biginteger.h:72]: (error) Array 'digits_[-1]' accessed at index 0, which is out of bounds.
[dependencies/RapidJSON/include/rapidjson/internal/biginteger.h:143]: (error) Array 'digits_[-1]' accessed at index 0, which is out of bounds.
[dependencies/RapidJSON/include/rapidjson/internal/biginteger.h:159]: (error) Array 'digits_[-1]' accessed at index 0, which is out of bounds.
[dependencies/RapidJSON/include/rapidjson/internal/biginteger.h:221]: (error) Array 'digits_[-1]' accessed at index 0, which is out of bounds.
Checking src/genomicsdb/variant_field_handler.cc: __clang__...
5/33 files checked 3% done
Checking src/loader/tiledb_loader_file_base.cc...
Checking example/src/example_ga4gh_scan_operator.cc: HTSDIR...
Checking src/genomicsdb/variant_storage_manager.cc: __clang__...
Checking example/src/gt_profile_query_processor.cc: HTSDIR...
Checking src/genomicsdb/variant_query_config.cc: HTSDIR...
Checking src/genomicsdb/query_variants.cc: DUPLICATE_CELL_AT_END...
Checking example/src/example_libtiledb_variant_driver.cc: HTSDIR...
Checking example/src/vcfdiff.cc: RAPIDJSON_GNUC...
Checking example/src/vcfdiff.cc: RAPIDJSON_NOMEMBERITERATORCLASS...
Checking example/src/vcfdiff.cc: RAPIDJSON_SIMD;_MSC_VER...
Checking example/src/vcfdiff.cc: RAPIDJSON_SSE2...
Checking example/src/vcfdiff.cc: RAPIDJSON_SSE2;_MSC_VER...
Checking example/src/vcfdiff.cc: RAPIDJSON_SSE42...
Checking example/src/vcfdiff.cc: RAPIDJSON_SSE42;_MSC_VER...
Checking example/src/vcfdiff.cc: STATIC_IMAXDIV...
Checking example/src/vcfdiff.cc: _BIG_ENDIAN...
Checking src/loader/tiledb_loader_file_base.cc: DO_PROFILING...
Checking example/src/gt_example_query_processor.cc: HTSDIR...
Checking src/genomicsdb/variant_storage_manager.cc: __clang__;__has_attribute...
Checking src/loader/tiledb_loader_file_base.cc: HTSDIR...
Checking example/src/vcf_histogram.cc: RAPIDJSON_GNUC...
Checking src/genomicsdb/variant.cc: HTSDIR...
Checking example/src/vcf_histogram.cc: RAPIDJSON_NOMEMBERITERATORCLASS...
Checking src/genomicsdb/variant_field_handler.cc: __clang__;__has_attribute...
Checking example/src/vcf_histogram.cc: RAPIDJSON_SIMD;_MSC_VER...
Checking example/src/vcf_histogram.cc: RAPIDJSON_SSE2...
Checking example/src/vcf2tiledb.cc: RAPIDJSON_GNUC...
6/33 files checked 7% done
Checking src/loader/tiledb_loader_text_file.cc...
Checking example/src/vcf_histogram.cc: RAPIDJSON_SSE2;_MSC_VER...
Checking example/src/vcf2tiledb.cc: RAPIDJSON_NOMEMBERITERATORCLASS...
Checking example/src/vcf_histogram.cc: RAPIDJSON_SSE42...
Checking example/src/vcf2tiledb.cc: RAPIDJSON_SIMD;_MSC_VER...
Checking example/src/vcf_histogram.cc: RAPIDJSON_SSE42;_MSC_VER...
Checking example/src/vcf2tiledb.cc: RAPIDJSON_SSE2...
Checking example/src/vcf_histogram.cc: STATIC_IMAXDIV...
Checking example/src/vcf2tiledb.cc: RAPIDJSON_SSE2;_MSC_VER...
Checking example/src/vcf_histogram.cc: USE_GPERFTOOLS...
Checking example/src/vcf2tiledb.cc: RAPIDJSON_SSE42...
Checking example/src/vcf_histogram.cc: _BIG_ENDIAN...
Checking example/src/vcf2tiledb.cc: RAPIDJSON_SSE42;_MSC_VER...
Checking example/src/vcf2tiledb.cc: STATIC_IMAXDIV...
Checking example/src/vcf2tiledb.cc: USE_GPERFTOOLS...
Checking example/src/vcf2tiledb.cc: _BIG_ENDIAN...
Checking example/src/example_ga4gh_scan_operator.cc: __clang__...
Checking src/genomicsdb/query_variants.cc: HTSDIR...
Checking src/loader/tiledb_loader_text_file.cc: DO_PROFILING...
Checking src/loader/tiledb_loader_file_base.cc: PRODUCE_CSV_CELLS...
Checking src/genomicsdb/variant_query_config.cc: __clang__...
Checking src/loader/tiledb_loader_text_file.cc: HTSDIR...
Checking example/src/gt_profile_query_processor.cc: __clang__...
Checking example/src/example_libtiledb_variant_driver.cc: USE_GPERFTOOLS...
Checking src/loader/tiledb_loader_file_base.cc: __clang__...
Checking example/src/gt_mpi_gather.cc: RAPIDJSON_GNUC...
7/33 files checked 10% done
Checking src/query_operations/broad_combined_gvcf.cc...
Checking example/src/gt_mpi_gather.cc: RAPIDJSON_NOMEMBERITERATORCLASS...
Checking example/src/gt_mpi_gather.cc: RAPIDJSON_SIMD;_MSC_VER...
Checking example/src/gt_example_query_processor.cc: USE_GPERFTOOLS...
Checking example/src/gt_mpi_gather.cc: RAPIDJSON_SSE2...
Checking example/src/gt_mpi_gather.cc: RAPIDJSON_SSE2;_MSC_VER...
Checking src/query_operations/broad_combined_gvcf.cc: DO_PROFILING;HTSDIR...
Checking example/src/gt_mpi_gather.cc: RAPIDJSON_SSE42...
Checking example/src/gt_mpi_gather.cc: RAPIDJSON_SSE42;_MSC_VER...
Checking example/src/gt_mpi_gather.cc: STATIC_IMAXDIV...
Checking src/loader/tiledb_loader_file_base.cc: __clang__;__has_attribute...
Checking example/src/gt_mpi_gather.cc: USE_BIGMPI...
Checking example/src/example_ga4gh_scan_operator.cc: __clang__;__has_attribute...
Checking example/src/gt_mpi_gather.cc: USE_GPERFTOOLS...
Checking example/src/gt_mpi_gather.cc: _BIG_ENDIAN...
Checking src/loader/tiledb_loader_text_file.cc: __clang__...
Checking src/genomicsdb/variant_query_config.cc: __clang__;__has_attribute...
Checking example/src/gt_profile_query_processor.cc: __clang__;__has_attribute...
8/33 files checked 13% done
Checking src/query_operations/variant_operations.cc...
Checking example/src/example_libtiledb_variant_driver.cc: __clang__...
Checking src/loader/tiledb_loader_text_file.cc: __clang__;__has_attribute...
Checking src/genomicsdb/variant.cc: __clang__...
9/33 files checked 14% done
Checking src/utils/command_line.cc...
10/33 files checked 14% done
Checking src/utils/histogram.cc...
Checking example/src/gt_example_query_processor.cc: __clang__...
11/33 files checked 16% done
Checking src/utils/json_config.cc...
12/33 files checked 16% done
Checking src/utils/known_field_info.cc...
Checking src/genomicsdb/query_variants.cc: __clang__...
13/33 files checked 18% done
Checking src/utils/libtiledb_variant.cc...
14/33 files checked 18% done
Checking src/utils/lut.cc...
Checking example/src/example_libtiledb_variant_driver.cc: __clang__;__has_attribute...
Checking src/utils/json_config.cc: DO_PROFILING...
Checking src/utils/known_field_info.cc: DO_PROFILING...
Checking src/utils/json_config.cc: HTSDIR...
Checking src/query_operations/broad_combined_gvcf.cc: HTSDIR...
Checking src/utils/json_config.cc: NDEBUG...
Checking src/utils/json_config.cc: NDEBUG;_MSC_VER...
Checking src/utils/json_config.cc: RAPIDJSON_DOXYGEN_RUNNING...
15/33 files checked 19% done
Checking src/utils/vid_mapper.cc...
Checking example/src/vcfdiff.cc: _LITTLE_ENDIAN...
Checking src/loader/load_operators.cc: RAPIDJSON_GNUC...
Checking src/loader/load_operators.cc: RAPIDJSON_NOMEMBERITERATORCLASS...
Checking src/genomicsdb/variant.cc: __clang__;__has_attribute...
Checking src/loader/load_operators.cc: RAPIDJSON_SIMD;_MSC_VER...
Checking src/query_operations/variant_operations.cc: DEBUG...
Checking src/loader/load_operators.cc: RAPIDJSON_SSE2...
Checking src/loader/load_operators.cc: RAPIDJSON_SSE2;_MSC_VER...
Checking src/utils/known_field_info.cc: HTSDIR...
Checking example/src/gt_example_query_processor.cc: __clang__;__has_attribute...
Checking src/loader/load_operators.cc: RAPIDJSON_SSE42...
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