From 5d49b89dd1c260f4b612898eb10fb45577522b05 Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" <41898282+github-actions[bot]@users.noreply.github.com> Date: Tue, 2 Jan 2024 15:38:56 +0000 Subject: [PATCH] Update publications spreadsheet --- get_publications.ipynb | 147 +++++++++++++++++------------------------ 1 file changed, 60 insertions(+), 87 deletions(-) diff --git a/get_publications.ipynb b/get_publications.ipynb index 6064c19..b1eae7b 100644 --- a/get_publications.ipynb +++ b/get_publications.ipynb @@ -5,10 +5,10 @@ "id": "74557173", "metadata": { "papermill": { - "duration": 0.002549, - "end_time": "2023-12-01T05:11:28.191759", + "duration": 0.002189, + "end_time": "2024-01-02T15:38:53.075458", "exception": false, - "start_time": "2023-12-01T05:11:28.189210", + "start_time": "2024-01-02T15:38:53.073269", "status": "completed" }, "tags": [] @@ -37,16 +37,16 @@ "id": "e22f3858", "metadata": { "execution": { - "iopub.execute_input": "2023-12-01T05:11:28.197379Z", - "iopub.status.busy": "2023-12-01T05:11:28.196967Z", - "iopub.status.idle": "2023-12-01T05:11:28.515931Z", - "shell.execute_reply": "2023-12-01T05:11:28.515351Z" + "iopub.execute_input": "2024-01-02T15:38:53.080589Z", + "iopub.status.busy": "2024-01-02T15:38:53.080033Z", + "iopub.status.idle": "2024-01-02T15:38:54.296780Z", + "shell.execute_reply": "2024-01-02T15:38:54.296127Z" }, "papermill": { - "duration": 0.323981, - "end_time": "2023-12-01T05:11:28.517670", + "duration": 1.221038, + "end_time": "2024-01-02T15:38:54.298377", "exception": false, - "start_time": "2023-12-01T05:11:28.193689", + "start_time": "2024-01-02T15:38:53.077339", "status": "completed" }, "tags": [] @@ -67,10 +67,10 @@ "id": "d526e19d", "metadata": { "papermill": { - "duration": 0.001689, - "end_time": "2023-12-01T05:11:28.521292", + "duration": 0.001718, + "end_time": "2024-01-02T15:38:54.302016", "exception": false, - "start_time": "2023-12-01T05:11:28.519603", + "start_time": "2024-01-02T15:38:54.300298", "status": "completed" }, "tags": [] @@ -85,16 +85,16 @@ "id": "5d9095c2", "metadata": { "execution": { - "iopub.execute_input": "2023-12-01T05:11:28.525820Z", - "iopub.status.busy": "2023-12-01T05:11:28.525198Z", - "iopub.status.idle": "2023-12-01T05:11:28.532498Z", - "shell.execute_reply": "2023-12-01T05:11:28.531866Z" + "iopub.execute_input": "2024-01-02T15:38:54.306812Z", + "iopub.status.busy": "2024-01-02T15:38:54.306215Z", + "iopub.status.idle": "2024-01-02T15:38:54.313531Z", + "shell.execute_reply": "2024-01-02T15:38:54.312940Z" }, "papermill": { - "duration": 0.011125, - "end_time": "2023-12-01T05:11:28.534019", + "duration": 0.011178, + "end_time": "2024-01-02T15:38:54.314868", "exception": false, - "start_time": "2023-12-01T05:11:28.522894", + "start_time": "2024-01-02T15:38:54.303690", "status": "completed" }, "tags": [] @@ -116,10 +116,10 @@ "id": "da017a87", "metadata": { "papermill": { - "duration": 0.001626, - "end_time": "2023-12-01T05:11:28.537359", + "duration": 0.001644, + "end_time": "2024-01-02T15:38:54.318239", "exception": false, - "start_time": "2023-12-01T05:11:28.535733", + "start_time": "2024-01-02T15:38:54.316595", "status": "completed" }, "tags": [] @@ -134,16 +134,16 @@ "id": "700613de", "metadata": { "execution": { - "iopub.execute_input": "2023-12-01T05:11:28.541576Z", - "iopub.status.busy": "2023-12-01T05:11:28.541166Z", - "iopub.status.idle": "2023-12-01T05:11:28.544812Z", - "shell.execute_reply": "2023-12-01T05:11:28.544103Z" + "iopub.execute_input": "2024-01-02T15:38:54.322658Z", + "iopub.status.busy": "2024-01-02T15:38:54.322283Z", + "iopub.status.idle": "2024-01-02T15:38:54.325919Z", + "shell.execute_reply": "2024-01-02T15:38:54.325259Z" }, "papermill": { - "duration": 0.007119, - "end_time": "2023-12-01T05:11:28.546066", + "duration": 0.007246, + "end_time": "2024-01-02T15:38:54.327181", "exception": false, - "start_time": "2023-12-01T05:11:28.538947", + "start_time": "2024-01-02T15:38:54.319935", "status": "completed" }, "tags": [] @@ -165,16 +165,16 @@ "id": "2ad1de07", "metadata": { "execution": { - "iopub.execute_input": "2023-12-01T05:11:28.550341Z", - "iopub.status.busy": "2023-12-01T05:11:28.549970Z", - "iopub.status.idle": "2023-12-01T05:11:30.046060Z", - "shell.execute_reply": "2023-12-01T05:11:30.045366Z" + "iopub.execute_input": "2024-01-02T15:38:54.331727Z", + "iopub.status.busy": "2024-01-02T15:38:54.331334Z", + "iopub.status.idle": "2024-01-02T15:38:55.989843Z", + "shell.execute_reply": "2024-01-02T15:38:55.989197Z" }, "papermill": { - "duration": 1.499934, - "end_time": "2023-12-01T05:11:30.047621", + "duration": 1.662344, + "end_time": "2024-01-02T15:38:55.991201", "exception": false, - "start_time": "2023-12-01T05:11:28.547687", + "start_time": "2024-01-02T15:38:54.328857", "status": "completed" }, "scrolled": true, @@ -201,7 +201,7 @@ "name": "stderr", "output_type": "stream", "text": [ - "/tmp/ipykernel_2533/990535001.py:54: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", + "/tmp/ipykernel_2002/990535001.py:54: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", " df = df_old.append(new_pubs)\n" ] } @@ -275,16 +275,16 @@ "id": "70df731e", "metadata": { "execution": { - "iopub.execute_input": "2023-12-01T05:11:30.052828Z", - "iopub.status.busy": "2023-12-01T05:11:30.052362Z", - "iopub.status.idle": "2023-12-01T05:11:30.059087Z", - "shell.execute_reply": "2023-12-01T05:11:30.058430Z" + "iopub.execute_input": "2024-01-02T15:38:55.996600Z", + "iopub.status.busy": "2024-01-02T15:38:55.996068Z", + "iopub.status.idle": "2024-01-02T15:38:56.003212Z", + "shell.execute_reply": "2024-01-02T15:38:56.002536Z" }, "papermill": { - "duration": 0.010802, - "end_time": "2023-12-01T05:11:30.060592", + "duration": 0.011356, + "end_time": "2024-01-02T15:38:56.004667", "exception": false, - "start_time": "2023-12-01T05:11:30.049790", + "start_time": "2024-01-02T15:38:55.993311", "status": "completed" }, "tags": [] @@ -295,13 +295,9 @@ "output_type": "stream", "text": [ "67 total articles found.\n", - "1 new articles found.\n", + "0 new articles found.\n", "\n", - "New publications found:\n", - "Title: Evaluation of surface-based hippocampal registration using ground-truth subfield definitions (Elife)\n", - "Authors: ['DeKraker J', 'Palomero-Gallagher N', 'Kedo O', 'Ladbon-Bernasconi N', 'Muenzing SEA', 'Axer M', 'Amunts K', 'Khan AR', 'Bernhardt BC', 'Evans AC']\n", - "Journal (Date): Elife (11/13/2023)\n", - "\n" + "New publications found:\n" ] } ], @@ -327,16 +323,16 @@ "id": "e76e9b21", "metadata": { "execution": { - "iopub.execute_input": "2023-12-01T05:11:30.065450Z", - "iopub.status.busy": "2023-12-01T05:11:30.065000Z", - "iopub.status.idle": "2023-12-01T05:11:30.077450Z", - "shell.execute_reply": "2023-12-01T05:11:30.076796Z" + "iopub.execute_input": "2024-01-02T15:38:56.009965Z", + "iopub.status.busy": "2024-01-02T15:38:56.009437Z", + "iopub.status.idle": "2024-01-02T15:38:56.024505Z", + "shell.execute_reply": "2024-01-02T15:38:56.023944Z" }, "papermill": { - "duration": 0.016279, - "end_time": "2023-12-01T05:11:30.078776", + "duration": 0.019157, + "end_time": "2024-01-02T15:38:56.025906", "exception": false, - "start_time": "2023-12-01T05:11:30.062497", + "start_time": "2024-01-02T15:38:56.006749", "status": "completed" }, "tags": [] @@ -378,37 +374,14 @@ " \n", " \n", " \n", - " \n", - " 0\n", - " 37956092\n", - " PMC10642966\n", - " 10.7554/eLife.88404\n", - " Evaluation of surface-based hippocampal regist...\n", - " [DeKraker J, Palomero-Gallagher N, Kedo O, Lad...\n", - " 2023\n", - " 11\n", - " 13\n", - " Elife\n", - " 12\n", - " \n", - " \n", - " \n", " \n", "\n", "" ], "text/plain": [ - " pmid pmcid doi \\\n", - "0 37956092 PMC10642966 10.7554/eLife.88404 \n", - "\n", - " title \\\n", - "0 Evaluation of surface-based hippocampal regist... \n", - "\n", - " authors year month day \\\n", - "0 [DeKraker J, Palomero-Gallagher N, Kedo O, Lad... 2023 11 13 \n", - "\n", - " journal volume issue pages \n", - "0 Elife 12 " + "Empty DataFrame\n", + "Columns: [pmid, pmcid, doi, title, authors, year, month, day, journal, volume, issue, pages]\n", + "Index: []" ] }, "execution_count": 6, @@ -443,14 +416,14 @@ }, "papermill": { "default_parameters": {}, - "duration": 2.925213, - "end_time": "2023-12-01T05:11:30.297428", + "duration": 4.000539, + "end_time": "2024-01-02T15:38:56.244266", "environment_variables": {}, "exception": null, "input_path": "/home/runner/work/khanlab.github.io/khanlab.github.io/get_publications.ipynb", "output_path": "/home/runner/work/khanlab.github.io/khanlab.github.io/get_publications.ipynb", "parameters": {}, - "start_time": "2023-12-01T05:11:27.372215", + "start_time": "2024-01-02T15:38:52.243727", "version": "2.3.3" }, "vscode": {