diff --git a/_data/publications/publications.csv b/_data/publications/publications.csv index 49569af..ae7ae3c 100644 --- a/_data/publications/publications.csv +++ b/_data/publications/publications.csv @@ -1,4 +1,6 @@ pmid,pmcid,doi,title,authors,year,month,day,journal,volume,issue,pages +38263439,PMC10806185,10.1038/s41598-024-52613-3,Comparison between a deep-learning and a pixel-based approach for the automated quantification of HIV target cells in foreskin tissue,"['Shao Z', 'Buchanan LB', 'Zuanazzi D', 'Khan YN', 'Khan AR', 'Prodger JL']",2024,1,23,Sci Rep,14,1,1985 +38235918,,10.1002/jor.25785,Assessing brain integrity in patients with long-term and well-functioning metal-based hip implants,"['Taleb S', 'Varela-Mattatall G', 'Allen A', 'Haast R', 'Khan AR', 'Kalia V', 'Howard JL', 'MacDonald SJ', 'Menon RS', 'Lanting BA', 'Teeter MG']",2024,1,18,J Orthop Res,,, 37956092,PMC10642966,10.7554/eLife.88404,Evaluation of surface-based hippocampal registration using ground-truth subfield definitions,"['DeKraker J', 'Palomero-Gallagher N', 'Kedo O', 'Ladbon-Bernasconi N', 'Muenzing SEA', 'Axer M', 'Amunts K', 'Khan AR', 'Bernhardt BC', 'Evans AC']",2023,11,13,Elife,12,, 37864501,,10.1111/jnc.15990,Focal acetylcholinergic modulation of the human midcingulo-insular network during attention: Meta-analytic neuroimaging and behavioral evidence,"['Chakraborty S', 'Lee SK', 'Arnold SM', 'Haast RAM', 'Khan AR', 'Schmitz TW']",2023,10,21,J Neurochem,,, 37663773,PMC10474320,10.1016/j.dib.2023.109513,A population-averaged structural connectomic brain atlas dataset from 422 HCP-aging subjects,"['Xiao Y', 'Gilmore G', 'Kai J', 'Lau JC', 'Peters T', 'Khan AR']",2023,10,1,Data Brief,50,,109513 diff --git a/get_publications.ipynb b/get_publications.ipynb index b1eae7b..a894130 100644 --- a/get_publications.ipynb +++ b/get_publications.ipynb @@ -5,10 +5,10 @@ "id": "74557173", "metadata": { "papermill": { - "duration": 0.002189, - "end_time": "2024-01-02T15:38:53.075458", + "duration": 0.002253, + "end_time": "2024-02-01T05:10:29.306155", "exception": false, - "start_time": "2024-01-02T15:38:53.073269", + "start_time": "2024-02-01T05:10:29.303902", "status": "completed" }, "tags": [] @@ -37,16 +37,16 @@ "id": "e22f3858", "metadata": { "execution": { - "iopub.execute_input": "2024-01-02T15:38:53.080589Z", - "iopub.status.busy": "2024-01-02T15:38:53.080033Z", - "iopub.status.idle": "2024-01-02T15:38:54.296780Z", - "shell.execute_reply": "2024-01-02T15:38:54.296127Z" + "iopub.execute_input": "2024-02-01T05:10:29.311526Z", + "iopub.status.busy": "2024-02-01T05:10:29.310940Z", + "iopub.status.idle": "2024-02-01T05:10:30.604251Z", + "shell.execute_reply": "2024-02-01T05:10:30.603611Z" }, "papermill": { - "duration": 1.221038, - "end_time": "2024-01-02T15:38:54.298377", + "duration": 1.297802, + "end_time": "2024-02-01T05:10:30.605893", "exception": false, - "start_time": "2024-01-02T15:38:53.077339", + "start_time": "2024-02-01T05:10:29.308091", "status": "completed" }, "tags": [] @@ -67,10 +67,10 @@ "id": "d526e19d", "metadata": { "papermill": { - "duration": 0.001718, - "end_time": "2024-01-02T15:38:54.302016", + "duration": 0.001766, + "end_time": "2024-02-01T05:10:30.609676", "exception": false, - "start_time": "2024-01-02T15:38:54.300298", + "start_time": "2024-02-01T05:10:30.607910", "status": "completed" }, "tags": [] @@ -85,16 +85,16 @@ "id": "5d9095c2", "metadata": { "execution": { - "iopub.execute_input": "2024-01-02T15:38:54.306812Z", - "iopub.status.busy": "2024-01-02T15:38:54.306215Z", - "iopub.status.idle": "2024-01-02T15:38:54.313531Z", - "shell.execute_reply": "2024-01-02T15:38:54.312940Z" + "iopub.execute_input": "2024-02-01T05:10:30.614431Z", + "iopub.status.busy": "2024-02-01T05:10:30.613839Z", + "iopub.status.idle": "2024-02-01T05:10:30.621582Z", + "shell.execute_reply": "2024-02-01T05:10:30.620927Z" }, "papermill": { - "duration": 0.011178, - "end_time": "2024-01-02T15:38:54.314868", + "duration": 0.011796, + "end_time": "2024-02-01T05:10:30.623149", "exception": false, - "start_time": "2024-01-02T15:38:54.303690", + "start_time": "2024-02-01T05:10:30.611353", "status": "completed" }, "tags": [] @@ -116,10 +116,10 @@ "id": "da017a87", "metadata": { "papermill": { - "duration": 0.001644, - "end_time": "2024-01-02T15:38:54.318239", + "duration": 0.001618, + "end_time": "2024-02-01T05:10:30.626561", "exception": false, - "start_time": "2024-01-02T15:38:54.316595", + "start_time": "2024-02-01T05:10:30.624943", "status": "completed" }, "tags": [] @@ -134,16 +134,16 @@ "id": "700613de", "metadata": { "execution": { - "iopub.execute_input": "2024-01-02T15:38:54.322658Z", - "iopub.status.busy": "2024-01-02T15:38:54.322283Z", - "iopub.status.idle": "2024-01-02T15:38:54.325919Z", - "shell.execute_reply": "2024-01-02T15:38:54.325259Z" + "iopub.execute_input": "2024-02-01T05:10:30.631290Z", + "iopub.status.busy": "2024-02-01T05:10:30.630760Z", + "iopub.status.idle": "2024-02-01T05:10:30.634729Z", + "shell.execute_reply": "2024-02-01T05:10:30.634050Z" }, "papermill": { - "duration": 0.007246, - "end_time": "2024-01-02T15:38:54.327181", + "duration": 0.007801, + "end_time": "2024-02-01T05:10:30.636088", "exception": false, - "start_time": "2024-01-02T15:38:54.319935", + "start_time": "2024-02-01T05:10:30.628287", "status": "completed" }, "tags": [] @@ -165,16 +165,16 @@ "id": "2ad1de07", "metadata": { "execution": { - "iopub.execute_input": "2024-01-02T15:38:54.331727Z", - "iopub.status.busy": "2024-01-02T15:38:54.331334Z", - "iopub.status.idle": "2024-01-02T15:38:55.989843Z", - "shell.execute_reply": "2024-01-02T15:38:55.989197Z" + "iopub.execute_input": "2024-02-01T05:10:30.640794Z", + "iopub.status.busy": "2024-02-01T05:10:30.640375Z", + "iopub.status.idle": "2024-02-01T05:10:32.137929Z", + "shell.execute_reply": "2024-02-01T05:10:32.137262Z" }, "papermill": { - "duration": 1.662344, - "end_time": "2024-01-02T15:38:55.991201", + "duration": 1.501772, + "end_time": "2024-02-01T05:10:32.139604", "exception": false, - "start_time": "2024-01-02T15:38:54.328857", + "start_time": "2024-02-01T05:10:30.637832", "status": "completed" }, "scrolled": true, @@ -187,7 +187,7 @@ "text": [ "Total number of publications containing \"Khan AR\"[AUTH] AND (\"2015/01/01\"[PDAT] : \"3000/12/31\"[PDAT]) AND\n", " (\"Western University\"[AFFL] OR \"University of Western Ontario\"[AFFL] OR\n", - " \"Brain and Mind Institute\"[AFFL] OR \"Robarts Research Institute\"[AFFL]): 74\n" + " \"Brain and Mind Institute\"[AFFL] OR \"Robarts Research Institute\"[AFFL]): 76\n" ] }, { @@ -201,7 +201,7 @@ "name": "stderr", "output_type": "stream", "text": [ - "/tmp/ipykernel_2002/990535001.py:54: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", + "/tmp/ipykernel_2297/990535001.py:54: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", " df = df_old.append(new_pubs)\n" ] } @@ -275,16 +275,16 @@ "id": "70df731e", "metadata": { "execution": { - "iopub.execute_input": "2024-01-02T15:38:55.996600Z", - "iopub.status.busy": "2024-01-02T15:38:55.996068Z", - "iopub.status.idle": "2024-01-02T15:38:56.003212Z", - "shell.execute_reply": "2024-01-02T15:38:56.002536Z" + "iopub.execute_input": "2024-02-01T05:10:32.145352Z", + "iopub.status.busy": "2024-02-01T05:10:32.145118Z", + "iopub.status.idle": "2024-02-01T05:10:32.153381Z", + "shell.execute_reply": "2024-02-01T05:10:32.152636Z" }, "papermill": { - "duration": 0.011356, - "end_time": "2024-01-02T15:38:56.004667", + "duration": 0.013039, + "end_time": "2024-02-01T05:10:32.154737", "exception": false, - "start_time": "2024-01-02T15:38:55.993311", + "start_time": "2024-02-01T05:10:32.141698", "status": "completed" }, "tags": [] @@ -294,10 +294,18 @@ "name": "stdout", "output_type": "stream", "text": [ - "67 total articles found.\n", - "0 new articles found.\n", + "69 total articles found.\n", + "2 new articles found.\n", "\n", - "New publications found:\n" + "New publications found:\n", + "Title: Comparison between a deep-learning and a pixel-based approach for the automated quantification of HIV target cells in foreskin tissue (Sci Rep)\n", + "Authors: ['Shao Z', 'Buchanan LB', 'Zuanazzi D', 'Khan YN', 'Khan AR', 'Prodger JL']\n", + "Journal (Date): Sci Rep (1/23/2024)\n", + "\n", + "Title: Assessing brain integrity in patients with long-term and well-functioning metal-based hip implants (J Orthop Res)\n", + "Authors: ['Taleb S', 'Varela-Mattatall G', 'Allen A', 'Haast R', 'Khan AR', 'Kalia V', 'Howard JL', 'MacDonald SJ', 'Menon RS', 'Lanting BA', 'Teeter MG']\n", + "Journal (Date): J Orthop Res (1/18/2024)\n", + "\n" ] } ], @@ -323,16 +331,16 @@ "id": "e76e9b21", "metadata": { "execution": { - "iopub.execute_input": "2024-01-02T15:38:56.009965Z", - "iopub.status.busy": "2024-01-02T15:38:56.009437Z", - "iopub.status.idle": "2024-01-02T15:38:56.024505Z", - "shell.execute_reply": "2024-01-02T15:38:56.023944Z" + "iopub.execute_input": "2024-02-01T05:10:32.161236Z", + "iopub.status.busy": "2024-02-01T05:10:32.160954Z", + "iopub.status.idle": "2024-02-01T05:10:32.185357Z", + "shell.execute_reply": "2024-02-01T05:10:32.184634Z" }, "papermill": { - "duration": 0.019157, - "end_time": "2024-01-02T15:38:56.025906", + "duration": 0.028983, + "end_time": "2024-02-01T05:10:32.186786", "exception": false, - "start_time": "2024-01-02T15:38:56.006749", + "start_time": "2024-02-01T05:10:32.157803", "status": "completed" }, "tags": [] @@ -374,14 +382,56 @@ " \n", " \n", " \n", + " \n", + " 0\n", + " 38263439\n", + " PMC10806185\n", + " 10.1038/s41598-024-52613-3\n", + " Comparison between a deep-learning and a pixel...\n", + " [Shao Z, Buchanan LB, Zuanazzi D, Khan YN, Kha...\n", + " 2024\n", + " 1\n", + " 23\n", + " Sci Rep\n", + " 14\n", + " 1\n", + " 1985\n", + " \n", + " \n", + " 1\n", + " 38235918\n", + " \n", + " 10.1002/jor.25785\n", + " Assessing brain integrity in patients with lon...\n", + " [Taleb S, Varela-Mattatall G, Allen A, Haast R...\n", + " 2024\n", + " 1\n", + " 18\n", + " J Orthop Res\n", + " \n", + " \n", + " \n", + " \n", " \n", "\n", "" ], "text/plain": [ - "Empty DataFrame\n", - "Columns: [pmid, pmcid, doi, title, authors, year, month, day, journal, volume, issue, pages]\n", - "Index: []" + " pmid pmcid doi \\\n", + "0 38263439 PMC10806185 10.1038/s41598-024-52613-3 \n", + "1 38235918 10.1002/jor.25785 \n", + "\n", + " title \\\n", + "0 Comparison between a deep-learning and a pixel... \n", + "1 Assessing brain integrity in patients with lon... \n", + "\n", + " authors year month day \\\n", + "0 [Shao Z, Buchanan LB, Zuanazzi D, Khan YN, Kha... 2024 1 23 \n", + "1 [Taleb S, Varela-Mattatall G, Allen A, Haast R... 2024 1 18 \n", + "\n", + " journal volume issue pages \n", + "0 Sci Rep 14 1 1985 \n", + "1 J Orthop Res " ] }, "execution_count": 6, @@ -416,14 +466,14 @@ }, "papermill": { "default_parameters": {}, - "duration": 4.000539, - "end_time": "2024-01-02T15:38:56.244266", + "duration": 3.931219, + "end_time": "2024-02-01T05:10:32.407609", "environment_variables": {}, "exception": null, "input_path": "/home/runner/work/khanlab.github.io/khanlab.github.io/get_publications.ipynb", "output_path": "/home/runner/work/khanlab.github.io/khanlab.github.io/get_publications.ipynb", "parameters": {}, - "start_time": "2024-01-02T15:38:52.243727", + "start_time": "2024-02-01T05:10:28.476390", "version": "2.3.3" }, "vscode": {