MARSTools contains the commandline version of the tools hosted in the Motif Assessment and Ranking Suite (MARS). There are three major set of tools:
- Scoring and Classification-Based MARS:
- SCORE (Assess_by_score.py)
- run_gimme.py (A wrapper from GimmeMotifs gimme roc)
- Consistency-Based MARS:
- run_tomtom.py -- From the MEME-Suite
- run_fisim.py -- From FISim Tools
- Enrichment-Based MARS:
- run_centrimo.py
To set up MARSTools, follow the following instructions. Clone the MARSTools repository into a directory you want to setup and create a conda environment using the requirements.yml file.
```
git clone https://github.com/kipkurui/MARSTools
#create a MARS conda environment
conda env create -f environment.yml
#Activate the environment
source activate MARS
```