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Installation fails for Python 3.10 on M1 #16

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gunesmes opened this issue Jun 7, 2022 · 5 comments
Open

Installation fails for Python 3.10 on M1 #16

gunesmes opened this issue Jun 7, 2022 · 5 comments

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@gunesmes
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gunesmes commented Jun 7, 2022

I got the following error:

pip install mistree
Collecting mistree
  Using cached mistree-1.2.0.tar.gz (27 kB)
  Preparing metadata (setup.py) ... done
Requirement already satisfied: numpy in /Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages (from mistree) (1.22.3)
Requirement already satisfied: matplotlib in /Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages (from mistree) (3.5.2)
Requirement already satisfied: scipy in /Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages (from mistree) (1.8.0)
Requirement already satisfied: scikit-learn in /Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages (from mistree) (1.1.1)
Requirement already satisfied: pyparsing>=2.2.1 in /Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages (from matplotlib->mistree) (3.0.7)
Requirement already satisfied: pillow>=6.2.0 in /Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages (from matplotlib->mistree) (8.4.0)
Requirement already satisfied: packaging>=20.0 in /Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages (from matplotlib->mistree) (21.3)
Requirement already satisfied: python-dateutil>=2.7 in /Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages (from matplotlib->mistree) (2.8.2)
Requirement already satisfied: kiwisolver>=1.0.1 in /Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages (from matplotlib->mistree) (1.4.2)
Requirement already satisfied: fonttools>=4.22.0 in /Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages (from matplotlib->mistree) (4.33.3)
Requirement already satisfied: cycler>=0.10 in /Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages (from matplotlib->mistree) (0.11.0)
Requirement already satisfied: threadpoolctl>=2.0.0 in /Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages (from scikit-learn->mistree) (3.1.0)
Requirement already satisfied: joblib>=1.0.0 in /Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages (from scikit-learn->mistree) (1.1.0)
Requirement already satisfied: six>=1.5 in /Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages (from python-dateutil>=2.7->matplotlib->mistree) (1.16.0)
Building wheels for collected packages: mistree
  Building wheel for mistree (setup.py) ... error
  error: subprocess-exited-with-error

  × python setup.py bdist_wheel did not run successfully.
  │ exit code: 1
  ╰─> [221 lines of output]
      running bdist_wheel
      running build
      running config_cc
      INFO: unifing config_cc, config, build_clib, build_ext, build commands --compiler options
      running config_fc
      INFO: unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
      running build_src
      INFO: build_src
      INFO: building extension "mistree.levy_flight.utility_random_walk" sources
      INFO: f2py options: []
      INFO:   adding 'build/src.macosx-12.2-arm64-3.10/build/src.macosx-12.2-arm64-3.10/mistree/levy_flight/fortranobject.c' to sources.
      INFO:   adding 'build/src.macosx-12.2-arm64-3.10/build/src.macosx-12.2-arm64-3.10/mistree/levy_flight' to include_dirs.
      INFO: building extension "mistree.mst.utility_density" sources
      INFO: f2py options: []
      INFO:   adding 'build/src.macosx-12.2-arm64-3.10/build/src.macosx-12.2-arm64-3.10/mistree/mst/fortranobject.c' to sources.
      INFO:   adding 'build/src.macosx-12.2-arm64-3.10/build/src.macosx-12.2-arm64-3.10/mistree/mst' to include_dirs.
      INFO: building extension "mistree.mst.utility_mst" sources
      INFO: f2py options: []
      INFO:   adding 'build/src.macosx-12.2-arm64-3.10/build/src.macosx-12.2-arm64-3.10/mistree/mst/fortranobject.c' to sources.
      INFO:   adding 'build/src.macosx-12.2-arm64-3.10/build/src.macosx-12.2-arm64-3.10/mistree/mst' to include_dirs.
      INFO: build_src: building npy-pkg config files
      running build_py
      creating build/lib.macosx-12.2-arm64-3.10
      creating build/lib.macosx-12.2-arm64-3.10/mistree
      copying mistree/__init__.py -> build/lib.macosx-12.2-arm64-3.10/mistree
      creating build/lib.macosx-12.2-arm64-3.10/mistree/mst
      copying mistree/mst/tomo.py -> build/lib.macosx-12.2-arm64-3.10/mistree/mst
      copying mistree/mst/partition.py -> build/lib.macosx-12.2-arm64-3.10/mistree/mst
      copying mistree/mst/scale_cut.py -> build/lib.macosx-12.2-arm64-3.10/mistree/mst
      copying mistree/mst/branches.py -> build/lib.macosx-12.2-arm64-3.10/mistree/mst
      copying mistree/mst/hist_mst.py -> build/lib.macosx-12.2-arm64-3.10/mistree/mst
      copying mistree/mst/graph.py -> build/lib.macosx-12.2-arm64-3.10/mistree/mst
      copying mistree/mst/__init__.py -> build/lib.macosx-12.2-arm64-3.10/mistree/mst
      copying mistree/mst/density.py -> build/lib.macosx-12.2-arm64-3.10/mistree/mst
      copying mistree/mst/stats.py -> build/lib.macosx-12.2-arm64-3.10/mistree/mst
      copying mistree/mst/construct.py -> build/lib.macosx-12.2-arm64-3.10/mistree/mst
      copying mistree/mst/get_mst_class.py -> build/lib.macosx-12.2-arm64-3.10/mistree/mst
      copying mistree/mst/plot_mst.py -> build/lib.macosx-12.2-arm64-3.10/mistree/mst
      creating build/lib.macosx-12.2-arm64-3.10/mistree/coordinates
      copying mistree/coordinates/__init__.py -> build/lib.macosx-12.2-arm64-3.10/mistree/coordinates
      copying mistree/coordinates/coordinate_utility.py -> build/lib.macosx-12.2-arm64-3.10/mistree/coordinates
      creating build/lib.macosx-12.2-arm64-3.10/mistree/levy_flight
      copying mistree/levy_flight/__init__.py -> build/lib.macosx-12.2-arm64-3.10/mistree/levy_flight
      copying mistree/levy_flight/levy_flight.py -> build/lib.macosx-12.2-arm64-3.10/mistree/levy_flight
      running build_ext
      INFO: customize UnixCCompiler
      INFO: customize UnixCCompiler using build_ext
      INFO: CCompilerOpt.cc_test_flags[1021] : testing flags (-march=native)
      INFO: C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -ftrapping-math

      creating /var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/tmpbdzci1cp/Users
      creating /var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/tmpbdzci1cp/Users/mesut
      creating /var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/tmpbdzci1cp/Users/mesut/.pyenv
      creating /var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/tmpbdzci1cp/Users/mesut/.pyenv/versions
      creating /var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/tmpbdzci1cp/Users/mesut/.pyenv/versions/3.10.2
      creating /var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/tmpbdzci1cp/Users/mesut/.pyenv/versions/3.10.2/lib
      creating /var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/tmpbdzci1cp/Users/mesut/.pyenv/versions/3.10.2/lib/python3.10
      creating /var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/tmpbdzci1cp/Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages
      creating /var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/tmpbdzci1cp/Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages/numpy
      creating /var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/tmpbdzci1cp/Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages/numpy/distutils
      creating /var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/tmpbdzci1cp/Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages/numpy/distutils/checks
      INFO: compile options: '-I/Users/mesut/.pyenv/versions/3.10.2/include/python3.10 -c'
      extra options: '-march=native'
      WARN: CCompilerOpt.dist_test[590] : CCompilerOpt._dist_test_spawn[724] : Command (clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -ftrapping-math -I/Users/mesut/.pyenv/versions/3.10.2/include/python3.10 -c /Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages/numpy/distutils/checks/test_flags.c -o /var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/tmpbdzci1cp/Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages/numpy/distutils/checks/test_flags.o -MMD -MF /var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/tmpbdzci1cp/Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages/numpy/distutils/checks/test_flags.o.d -march=native) failed with exit status 1 output ->
      clang: error: the clang compiler does not support '-march=native'

      WARN: CCompilerOpt.cc_test_flags[1025] : testing failed
      INFO: CCompilerOpt.cc_test_flags[1021] : testing flags (-O3)
      INFO: C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -ftrapping-math

      INFO: compile options: '-I/Users/mesut/.pyenv/versions/3.10.2/include/python3.10 -c'
      extra options: '-O3'
      INFO: CCompilerOpt.cc_test_flags[1021] : testing flags (-Werror=switch)
      INFO: C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -ftrapping-math

      INFO: compile options: '-I/Users/mesut/.pyenv/versions/3.10.2/include/python3.10 -c'
      extra options: '-Werror=switch'
      INFO: CCompilerOpt.cc_test_flags[1021] : testing flags (-Werror)
      INFO: C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -ftrapping-math

      INFO: compile options: '-I/Users/mesut/.pyenv/versions/3.10.2/include/python3.10 -c'
      extra options: '-Werror'
      WARN: CCompilerOpt.dist_test[590] : CCompilerOpt._dist_test_spawn[724] : Command (clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -ftrapping-math -I/Users/mesut/.pyenv/versions/3.10.2/include/python3.10 -c /Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages/numpy/distutils/checks/test_flags.c -o /var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/tmpbdzci1cp/Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages/numpy/distutils/checks/test_flags.o -MMD -MF /var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/tmpbdzci1cp/Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages/numpy/distutils/checks/test_flags.o.d -Werror) failed with exit status 1 output ->
      error: overriding currently unsupported use of floating point exceptions on this target [-Werror,-Wunsupported-floating-point-opt]
      1 error generated.

      WARN: CCompilerOpt.cc_test_flags[1025] : testing failed
      INFO: CCompilerOpt.__init__[1709] : check requested baseline
      INFO: CCompilerOpt.feature_test[1474] : testing feature 'NEON' with flags ()
      INFO: C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -ftrapping-math

      INFO: compile options: '-I/Users/mesut/.pyenv/versions/3.10.2/include/python3.10 -c'
      extra options: '-Werror=switch'
      INFO: CCompilerOpt.feature_test[1474] : testing feature 'ASIMD' with flags ()
      INFO: C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -ftrapping-math

      INFO: compile options: '-I/Users/mesut/.pyenv/versions/3.10.2/include/python3.10 -c'
      extra options: '-Werror=switch'
      INFO: CCompilerOpt.feature_test[1474] : testing feature 'NEON_FP16' with flags ()
      INFO: C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -ftrapping-math

      INFO: compile options: '-I/Users/mesut/.pyenv/versions/3.10.2/include/python3.10 -c'
      extra options: '-Werror=switch'
      INFO: CCompilerOpt.feature_test[1474] : testing feature 'NEON_VFPV4' with flags ()
      INFO: C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -ftrapping-math

      INFO: compile options: '-I/Users/mesut/.pyenv/versions/3.10.2/include/python3.10 -c'
      extra options: '-Werror=switch'
      INFO: CCompilerOpt.__init__[1718] : check requested dispatch-able features
      INFO: CCompilerOpt.cc_test_flags[1021] : testing flags (-march=armv8.2-a+fp16)
      INFO: C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -ftrapping-math

      INFO: compile options: '-I/Users/mesut/.pyenv/versions/3.10.2/include/python3.10 -c'
      extra options: '-march=armv8.2-a+fp16'
      INFO: CCompilerOpt.feature_test[1474] : testing feature 'ASIMDHP' with flags (-march=armv8.2-a+fp16)
      INFO: C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -ftrapping-math

      INFO: compile options: '-I/Users/mesut/.pyenv/versions/3.10.2/include/python3.10 -c'
      extra options: '-march=armv8.2-a+fp16 -Werror=switch'
      INFO: CCompilerOpt.cc_test_flags[1021] : testing flags (-march=armv8.2-a+fp16fml)
      INFO: C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -ftrapping-math

      INFO: compile options: '-I/Users/mesut/.pyenv/versions/3.10.2/include/python3.10 -c'
      extra options: '-march=armv8.2-a+fp16fml'
      INFO: CCompilerOpt.feature_test[1474] : testing feature 'ASIMDFHM' with flags (-march=armv8.2-a+fp16+fp16fml)
      INFO: C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -ftrapping-math

      INFO: compile options: '-I/Users/mesut/.pyenv/versions/3.10.2/include/python3.10 -c'
      extra options: '-march=armv8.2-a+fp16+fp16fml -Werror=switch'
      WARN: CCompilerOpt.dist_test[590] : CCompilerOpt._dist_test_spawn[724] : Command (clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -ftrapping-math -I/Users/mesut/.pyenv/versions/3.10.2/include/python3.10 -c /Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages/numpy/distutils/checks/cpu_asimdfhm.c -o /var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/tmpbdzci1cp/Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages/numpy/distutils/checks/cpu_asimdfhm.o -MMD -MF /var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/tmpbdzci1cp/Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages/numpy/distutils/checks/cpu_asimdfhm.o.d -march=armv8.2-a+fp16+fp16fml -Werror=switch) failed with exit status 1 output ->
      warning: overriding currently unsupported use of floating point exceptions on this target [-Wunsupported-floating-point-opt]
      /Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:13:35: error: implicit declaration of function 'vfmlal_low_u32' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
          int ret  = (int)vget_lane_f32(vfmlal_low_u32(vlf, vlhp, vlhp), 0);
                                        ^
      /Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:13:35: note: did you mean 'vfmlal_low_f16'?
      /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/13.1.6/include/arm_neon.h:43691:18: note: 'vfmlal_low_f16' declared here
      __ai float32x2_t vfmlal_low_f16(float32x2_t __p0, float16x4_t __p1, float16x4_t __p2) {
                       ^
      /Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:13:21: error: initializing 'float32x2_t' (vector of 2 'float32_t' values) with an expression of incompatible type 'int'
          int ret  = (int)vget_lane_f32(vfmlal_low_u32(vlf, vlhp, vlhp), 0);
                          ^             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/13.1.6/include/arm_neon.h:7977:15: note: expanded from macro 'vget_lane_f32'
        float32x2_t __s0 = __p0; \
                    ^      ~~~~
      /Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:14:36: error: implicit declaration of function 'vfmlslq_high_u32' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
              ret += (int)vgetq_lane_f32(vfmlslq_high_u32(vf, vhp, vhp), 0);
                                         ^
      /Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:14:36: note: did you mean 'vmlsl_high_u32'?
      /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/13.1.6/include/arm_neon.h:69448:17: note: 'vmlsl_high_u32' declared here
      __ai uint64x2_t vmlsl_high_u32(uint64x2_t __p0, uint32x4_t __p1, uint32x4_t __p2) {
                      ^
      /Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:14:21: error: initializing 'float32x4_t' (vector of 4 'float32_t' values) with an expression of incompatible type 'int'
              ret += (int)vgetq_lane_f32(vfmlslq_high_u32(vf, vhp, vhp), 0);
                          ^              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/13.1.6/include/arm_neon.h:7787:15: note: expanded from macro 'vgetq_lane_f32'
        float32x4_t __s0 = __p0; \
                    ^      ~~~~
      1 warning and 4 errors generated.

      WARN: CCompilerOpt.feature_test[1490] : testing failed
      INFO: CCompilerOpt.cc_test_flags[1021] : testing flags (-march=armv8.2-a+dotprod)
      INFO: C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -ftrapping-math

      INFO: compile options: '-I/Users/mesut/.pyenv/versions/3.10.2/include/python3.10 -c'
      extra options: '-march=armv8.2-a+dotprod'
      INFO: CCompilerOpt.feature_test[1474] : testing feature 'ASIMDDP' with flags (-march=armv8.2-a+dotprod)
      INFO: C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -ftrapping-math

      INFO: compile options: '-I/Users/mesut/.pyenv/versions/3.10.2/include/python3.10 -c'
      extra options: '-march=armv8.2-a+dotprod -Werror=switch'
      INFO: CCompilerOpt.__init__[1730] : skip features (NEON_VFPV4 ASIMD NEON NEON_FP16) since its part of baseline
      INFO: CCompilerOpt.__init__[1734] : initialize targets groups
      INFO: CCompilerOpt.__init__[1736] : parse target group simd_test
      INFO: CCompilerOpt._parse_target_tokens[1947] : skip targets (VSX2 VSX FMA4 VSX3 (FMA3 AVX2) XOP SSE42 AVX512_SKX AVX512F SSE2) not part of baseline or dispatch-able features
      INFO: CCompilerOpt._parse_policy_not_keepbase[2059] : skip baseline features (ASIMD)
      INFO: CCompilerOpt.generate_dispatch_header[2280] : generate CPU dispatch header: (build/src.macosx-12.2-arm64-3.10/numpy/distutils/include/npy_cpu_dispatch_config.h)
      WARN: CCompilerOpt.generate_dispatch_header[2289] : dispatch header dir build/src.macosx-12.2-arm64-3.10/numpy/distutils/include does not exist, creating it
      INFO: get_default_fcompiler: matching types: '['gnu95', 'nag', 'nagfor', 'absoft', 'ibm', 'intel', 'gnu', 'g95', 'pg']'
      INFO: customize Gnu95FCompiler
      WARN: Could not locate executable gfortran
      WARN: Could not locate executable f95
      INFO: customize NAGFCompiler
      INFO: customize NAGFORCompiler
      WARN: Could not locate executable nagfor
      INFO: customize AbsoftFCompiler
      WARN: Could not locate executable f90
      WARN: Could not locate executable f77
      INFO: customize IBMFCompiler
      WARN: Could not locate executable xlf90
      WARN: Could not locate executable xlf
      INFO: customize IntelFCompiler
      WARN: Could not locate executable ifort
      WARN: Could not locate executable ifc
      INFO: customize GnuFCompiler
      WARN: Could not locate executable g77
      INFO: customize G95FCompiler
      WARN: Could not locate executable g95
      INFO: customize PGroupFCompiler
      WARN: Could not locate executable pgfortran
      WARN: don't know how to compile Fortran code on platform 'posix'
      warning: build_ext: f77_compiler=None is not available.

      INFO: building 'mistree.levy_flight.utility_random_walk' extension
      error: extension 'mistree.levy_flight.utility_random_walk' has Fortran sources but no Fortran compiler found
      INFO:
      ########### EXT COMPILER OPTIMIZATION ###########
      INFO: Platform      :
        Architecture: aarch64
        Compiler    : clang

      CPU baseline  :
        Requested   : 'min'
        Enabled     : NEON NEON_FP16 NEON_VFPV4 ASIMD
        Flags       : none
        Extra checks: none

      CPU dispatch  :
        Requested   : 'max -xop -fma4'
        Enabled     : ASIMDHP ASIMDDP
        Generated   : none
      INFO: CCompilerOpt.cache_flush[817] : write cache to path -> /private/var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/pip-install-kkx2y8lx/mistree_60ca7f6cc91b40579fedbc973f4d598e/build/temp.macosx-12.2-arm64-3.10/ccompiler_opt_cache_ext.py
      [end of output]

  note: This error originates from a subprocess, and is likely not a problem with pip.
  ERROR: Failed building wheel for mistree
  Running setup.py clean for mistree
Failed to build mistree
Installing collected packages: mistree
  Running setup.py install for mistree ... error
  error: subprocess-exited-with-error

  × Running setup.py install for mistree did not run successfully.
  │ exit code: 1
  ╰─> [220 lines of output]
      running install
      running build
      running config_cc
      INFO: unifing config_cc, config, build_clib, build_ext, build commands --compiler options
      running config_fc
      INFO: unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
      running build_src
      INFO: build_src
      INFO: building extension "mistree.levy_flight.utility_random_walk" sources
      INFO: f2py options: []
      INFO:   adding 'build/src.macosx-12.2-arm64-3.10/build/src.macosx-12.2-arm64-3.10/mistree/levy_flight/fortranobject.c' to sources.
      INFO:   adding 'build/src.macosx-12.2-arm64-3.10/build/src.macosx-12.2-arm64-3.10/mistree/levy_flight' to include_dirs.
      INFO: building extension "mistree.mst.utility_density" sources
      INFO: f2py options: []
      INFO:   adding 'build/src.macosx-12.2-arm64-3.10/build/src.macosx-12.2-arm64-3.10/mistree/mst/fortranobject.c' to sources.
      INFO:   adding 'build/src.macosx-12.2-arm64-3.10/build/src.macosx-12.2-arm64-3.10/mistree/mst' to include_dirs.
      INFO: building extension "mistree.mst.utility_mst" sources
      INFO: f2py options: []
      INFO:   adding 'build/src.macosx-12.2-arm64-3.10/build/src.macosx-12.2-arm64-3.10/mistree/mst/fortranobject.c' to sources.
      INFO:   adding 'build/src.macosx-12.2-arm64-3.10/build/src.macosx-12.2-arm64-3.10/mistree/mst' to include_dirs.
      INFO: build_src: building npy-pkg config files
      running build_py
      creating build/lib.macosx-12.2-arm64-3.10
      creating build/lib.macosx-12.2-arm64-3.10/mistree
      copying mistree/__init__.py -> build/lib.macosx-12.2-arm64-3.10/mistree
      creating build/lib.macosx-12.2-arm64-3.10/mistree/mst
      copying mistree/mst/tomo.py -> build/lib.macosx-12.2-arm64-3.10/mistree/mst
      copying mistree/mst/partition.py -> build/lib.macosx-12.2-arm64-3.10/mistree/mst
      copying mistree/mst/scale_cut.py -> build/lib.macosx-12.2-arm64-3.10/mistree/mst
      copying mistree/mst/branches.py -> build/lib.macosx-12.2-arm64-3.10/mistree/mst
      copying mistree/mst/hist_mst.py -> build/lib.macosx-12.2-arm64-3.10/mistree/mst
      copying mistree/mst/graph.py -> build/lib.macosx-12.2-arm64-3.10/mistree/mst
      copying mistree/mst/__init__.py -> build/lib.macosx-12.2-arm64-3.10/mistree/mst
      copying mistree/mst/density.py -> build/lib.macosx-12.2-arm64-3.10/mistree/mst
      copying mistree/mst/stats.py -> build/lib.macosx-12.2-arm64-3.10/mistree/mst
      copying mistree/mst/construct.py -> build/lib.macosx-12.2-arm64-3.10/mistree/mst
      copying mistree/mst/get_mst_class.py -> build/lib.macosx-12.2-arm64-3.10/mistree/mst
      copying mistree/mst/plot_mst.py -> build/lib.macosx-12.2-arm64-3.10/mistree/mst
      creating build/lib.macosx-12.2-arm64-3.10/mistree/coordinates
      copying mistree/coordinates/__init__.py -> build/lib.macosx-12.2-arm64-3.10/mistree/coordinates
      copying mistree/coordinates/coordinate_utility.py -> build/lib.macosx-12.2-arm64-3.10/mistree/coordinates
      creating build/lib.macosx-12.2-arm64-3.10/mistree/levy_flight
      copying mistree/levy_flight/__init__.py -> build/lib.macosx-12.2-arm64-3.10/mistree/levy_flight
      copying mistree/levy_flight/levy_flight.py -> build/lib.macosx-12.2-arm64-3.10/mistree/levy_flight
      running build_ext
      INFO: customize UnixCCompiler
      INFO: customize UnixCCompiler using build_ext
      INFO: CCompilerOpt.cc_test_flags[1021] : testing flags (-march=native)
      INFO: C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -ftrapping-math

      creating /var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/tmpp9gl966c/Users
      creating /var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/tmpp9gl966c/Users/mesut
      creating /var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/tmpp9gl966c/Users/mesut/.pyenv
      creating /var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/tmpp9gl966c/Users/mesut/.pyenv/versions
      creating /var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/tmpp9gl966c/Users/mesut/.pyenv/versions/3.10.2
      creating /var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/tmpp9gl966c/Users/mesut/.pyenv/versions/3.10.2/lib
      creating /var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/tmpp9gl966c/Users/mesut/.pyenv/versions/3.10.2/lib/python3.10
      creating /var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/tmpp9gl966c/Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages
      creating /var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/tmpp9gl966c/Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages/numpy
      creating /var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/tmpp9gl966c/Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages/numpy/distutils
      creating /var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/tmpp9gl966c/Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages/numpy/distutils/checks
      INFO: compile options: '-I/Users/mesut/.pyenv/versions/3.10.2/include/python3.10 -c'
      extra options: '-march=native'
      WARN: CCompilerOpt.dist_test[590] : CCompilerOpt._dist_test_spawn[724] : Command (clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -ftrapping-math -I/Users/mesut/.pyenv/versions/3.10.2/include/python3.10 -c /Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages/numpy/distutils/checks/test_flags.c -o /var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/tmpp9gl966c/Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages/numpy/distutils/checks/test_flags.o -MMD -MF /var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/tmpp9gl966c/Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages/numpy/distutils/checks/test_flags.o.d -march=native) failed with exit status 1 output ->
      clang: error: the clang compiler does not support '-march=native'

      WARN: CCompilerOpt.cc_test_flags[1025] : testing failed
      INFO: CCompilerOpt.cc_test_flags[1021] : testing flags (-O3)
      INFO: C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -ftrapping-math

      INFO: compile options: '-I/Users/mesut/.pyenv/versions/3.10.2/include/python3.10 -c'
      extra options: '-O3'
      INFO: CCompilerOpt.cc_test_flags[1021] : testing flags (-Werror=switch)
      INFO: C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -ftrapping-math

      INFO: compile options: '-I/Users/mesut/.pyenv/versions/3.10.2/include/python3.10 -c'
      extra options: '-Werror=switch'
      INFO: CCompilerOpt.cc_test_flags[1021] : testing flags (-Werror)
      INFO: C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -ftrapping-math

      INFO: compile options: '-I/Users/mesut/.pyenv/versions/3.10.2/include/python3.10 -c'
      extra options: '-Werror'
      WARN: CCompilerOpt.dist_test[590] : CCompilerOpt._dist_test_spawn[724] : Command (clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -ftrapping-math -I/Users/mesut/.pyenv/versions/3.10.2/include/python3.10 -c /Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages/numpy/distutils/checks/test_flags.c -o /var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/tmpp9gl966c/Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages/numpy/distutils/checks/test_flags.o -MMD -MF /var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/tmpp9gl966c/Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages/numpy/distutils/checks/test_flags.o.d -Werror) failed with exit status 1 output ->
      error: overriding currently unsupported use of floating point exceptions on this target [-Werror,-Wunsupported-floating-point-opt]
      1 error generated.

      WARN: CCompilerOpt.cc_test_flags[1025] : testing failed
      INFO: CCompilerOpt.__init__[1709] : check requested baseline
      INFO: CCompilerOpt.feature_test[1474] : testing feature 'NEON_VFPV4' with flags ()
      INFO: C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -ftrapping-math

      INFO: compile options: '-I/Users/mesut/.pyenv/versions/3.10.2/include/python3.10 -c'
      extra options: '-Werror=switch'
      INFO: CCompilerOpt.feature_test[1474] : testing feature 'NEON_FP16' with flags ()
      INFO: C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -ftrapping-math

      INFO: compile options: '-I/Users/mesut/.pyenv/versions/3.10.2/include/python3.10 -c'
      extra options: '-Werror=switch'
      INFO: CCompilerOpt.feature_test[1474] : testing feature 'NEON' with flags ()
      INFO: C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -ftrapping-math

      INFO: compile options: '-I/Users/mesut/.pyenv/versions/3.10.2/include/python3.10 -c'
      extra options: '-Werror=switch'
      INFO: CCompilerOpt.feature_test[1474] : testing feature 'ASIMD' with flags ()
      INFO: C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -ftrapping-math

      INFO: compile options: '-I/Users/mesut/.pyenv/versions/3.10.2/include/python3.10 -c'
      extra options: '-Werror=switch'
      INFO: CCompilerOpt.__init__[1718] : check requested dispatch-able features
      INFO: CCompilerOpt.cc_test_flags[1021] : testing flags (-march=armv8.2-a+fp16)
      INFO: C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -ftrapping-math

      INFO: compile options: '-I/Users/mesut/.pyenv/versions/3.10.2/include/python3.10 -c'
      extra options: '-march=armv8.2-a+fp16'
      INFO: CCompilerOpt.feature_test[1474] : testing feature 'ASIMDHP' with flags (-march=armv8.2-a+fp16)
      INFO: C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -ftrapping-math

      INFO: compile options: '-I/Users/mesut/.pyenv/versions/3.10.2/include/python3.10 -c'
      extra options: '-march=armv8.2-a+fp16 -Werror=switch'
      INFO: CCompilerOpt.cc_test_flags[1021] : testing flags (-march=armv8.2-a+fp16fml)
      INFO: C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -ftrapping-math

      INFO: compile options: '-I/Users/mesut/.pyenv/versions/3.10.2/include/python3.10 -c'
      extra options: '-march=armv8.2-a+fp16fml'
      INFO: CCompilerOpt.feature_test[1474] : testing feature 'ASIMDFHM' with flags (-march=armv8.2-a+fp16+fp16fml)
      INFO: C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -ftrapping-math

      INFO: compile options: '-I/Users/mesut/.pyenv/versions/3.10.2/include/python3.10 -c'
      extra options: '-march=armv8.2-a+fp16+fp16fml -Werror=switch'
      WARN: CCompilerOpt.dist_test[590] : CCompilerOpt._dist_test_spawn[724] : Command (clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -ftrapping-math -I/Users/mesut/.pyenv/versions/3.10.2/include/python3.10 -c /Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages/numpy/distutils/checks/cpu_asimdfhm.c -o /var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/tmpp9gl966c/Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages/numpy/distutils/checks/cpu_asimdfhm.o -MMD -MF /var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/tmpp9gl966c/Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages/numpy/distutils/checks/cpu_asimdfhm.o.d -march=armv8.2-a+fp16+fp16fml -Werror=switch) failed with exit status 1 output ->
      warning: overriding currently unsupported use of floating point exceptions on this target [-Wunsupported-floating-point-opt]
      /Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:13:35: error: implicit declaration of function 'vfmlal_low_u32' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
          int ret  = (int)vget_lane_f32(vfmlal_low_u32(vlf, vlhp, vlhp), 0);
                                        ^
      /Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:13:35: note: did you mean 'vfmlal_low_f16'?
      /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/13.1.6/include/arm_neon.h:43691:18: note: 'vfmlal_low_f16' declared here
      __ai float32x2_t vfmlal_low_f16(float32x2_t __p0, float16x4_t __p1, float16x4_t __p2) {
                       ^
      /Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:13:21: error: initializing 'float32x2_t' (vector of 2 'float32_t' values) with an expression of incompatible type 'int'
          int ret  = (int)vget_lane_f32(vfmlal_low_u32(vlf, vlhp, vlhp), 0);
                          ^             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/13.1.6/include/arm_neon.h:7977:15: note: expanded from macro 'vget_lane_f32'
        float32x2_t __s0 = __p0; \
                    ^      ~~~~
      /Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:14:36: error: implicit declaration of function 'vfmlslq_high_u32' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
              ret += (int)vgetq_lane_f32(vfmlslq_high_u32(vf, vhp, vhp), 0);
                                         ^
      /Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:14:36: note: did you mean 'vmlsl_high_u32'?
      /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/13.1.6/include/arm_neon.h:69448:17: note: 'vmlsl_high_u32' declared here
      __ai uint64x2_t vmlsl_high_u32(uint64x2_t __p0, uint32x4_t __p1, uint32x4_t __p2) {
                      ^
      /Users/mesut/.pyenv/versions/3.10.2/lib/python3.10/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:14:21: error: initializing 'float32x4_t' (vector of 4 'float32_t' values) with an expression of incompatible type 'int'
              ret += (int)vgetq_lane_f32(vfmlslq_high_u32(vf, vhp, vhp), 0);
                          ^              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/13.1.6/include/arm_neon.h:7787:15: note: expanded from macro 'vgetq_lane_f32'
        float32x4_t __s0 = __p0; \
                    ^      ~~~~
      1 warning and 4 errors generated.

      WARN: CCompilerOpt.feature_test[1490] : testing failed
      INFO: CCompilerOpt.cc_test_flags[1021] : testing flags (-march=armv8.2-a+dotprod)
      INFO: C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -ftrapping-math

      INFO: compile options: '-I/Users/mesut/.pyenv/versions/3.10.2/include/python3.10 -c'
      extra options: '-march=armv8.2-a+dotprod'
      INFO: CCompilerOpt.feature_test[1474] : testing feature 'ASIMDDP' with flags (-march=armv8.2-a+dotprod)
      INFO: C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -ftrapping-math

      INFO: compile options: '-I/Users/mesut/.pyenv/versions/3.10.2/include/python3.10 -c'
      extra options: '-march=armv8.2-a+dotprod -Werror=switch'
      INFO: CCompilerOpt.__init__[1730] : skip features (ASIMD NEON_VFPV4 NEON_FP16 NEON) since its part of baseline
      INFO: CCompilerOpt.__init__[1734] : initialize targets groups
      INFO: CCompilerOpt.__init__[1736] : parse target group simd_test
      INFO: CCompilerOpt._parse_target_tokens[1947] : skip targets (SSE42 VSX2 XOP SSE2 AVX512_SKX FMA4 (AVX2 FMA3) AVX512F VSX3 VSX) not part of baseline or dispatch-able features
      INFO: CCompilerOpt._parse_policy_not_keepbase[2059] : skip baseline features (ASIMD)
      INFO: CCompilerOpt.generate_dispatch_header[2280] : generate CPU dispatch header: (build/src.macosx-12.2-arm64-3.10/numpy/distutils/include/npy_cpu_dispatch_config.h)
      INFO: get_default_fcompiler: matching types: '['gnu95', 'nag', 'nagfor', 'absoft', 'ibm', 'intel', 'gnu', 'g95', 'pg']'
      INFO: customize Gnu95FCompiler
      WARN: Could not locate executable gfortran
      WARN: Could not locate executable f95
      INFO: customize NAGFCompiler
      INFO: customize NAGFORCompiler
      WARN: Could not locate executable nagfor
      INFO: customize AbsoftFCompiler
      WARN: Could not locate executable f90
      WARN: Could not locate executable f77
      INFO: customize IBMFCompiler
      WARN: Could not locate executable xlf90
      WARN: Could not locate executable xlf
      INFO: customize IntelFCompiler
      WARN: Could not locate executable ifort
      WARN: Could not locate executable ifc
      INFO: customize GnuFCompiler
      WARN: Could not locate executable g77
      INFO: customize G95FCompiler
      WARN: Could not locate executable g95
      INFO: customize PGroupFCompiler
      WARN: Could not locate executable pgfortran
      WARN: don't know how to compile Fortran code on platform 'posix'
      warning: build_ext: f77_compiler=None is not available.

      INFO: building 'mistree.levy_flight.utility_random_walk' extension
      error: extension 'mistree.levy_flight.utility_random_walk' has Fortran sources but no Fortran compiler found
      INFO:
      ########### EXT COMPILER OPTIMIZATION ###########
      INFO: Platform      :
        Architecture: aarch64
        Compiler    : clang

      CPU baseline  :
        Requested   : 'min'
        Enabled     : NEON NEON_FP16 NEON_VFPV4 ASIMD
        Flags       : none
        Extra checks: none

      CPU dispatch  :
        Requested   : 'max -xop -fma4'
        Enabled     : ASIMDHP ASIMDDP
        Generated   : none
      INFO: CCompilerOpt.cache_flush[817] : write cache to path -> /private/var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/pip-install-kkx2y8lx/mistree_60ca7f6cc91b40579fedbc973f4d598e/build/temp.macosx-12.2-arm64-3.10/ccompiler_opt_cache_ext.py
      [end of output]

  note: This error originates from a subprocess, and is likely not a problem with pip.
error: legacy-install-failure

× Encountered error while trying to install package.
╰─> mistree

note: This is an issue with the package mentioned above, not pip.
hint: See above for output from the failure.
@knaidoo29
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Hi @gunesmes, it appears that the installation is failing when compiling the fortran subroutines. It's not clear to me if this is an M1 thing or a python 3.10 thing. I'm not sure if f2py, which does the fortran compiling, works on 3.10 yet -- I remember having some issues with the very latest/developer branches of python so what you're seeing could just be this. So I would suggest installing mistree on an earlier version of python (3.8 and below should be fine) and that should hopefully solve the issue. If the problem persists please let me know and I'll take a closer look at it.

@gunesmes
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gunesmes commented Jun 10, 2022 •
edited
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I have the same issue for 3.9, also I tried to install 3.8 via pyenv but it seems 3.8 is not compatible with M1

mesut@mesut-gunes ~/p/p/a/src [2]> pyenv install 3.8.0
python-build: use [email protected] from homebrew
python-build: use readline from homebrew
Downloading Python-3.8.0.tar.xz...
-> https://www.python.org/ftp/python/3.8.0/Python-3.8.0.tar.xz
Installing Python-3.8.0...
python-build: use readline from homebrew
python-build: use zlib from xcode sdk

BUILD FAILED (OS X 12.3.1 using python-build 20180424)

Inspect or clean up the working tree at /var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/python-build.20220608173628.63365
Results logged to /var/folders/7h/f3_2t1sj3d767x_vsjw126fh0000gn/T/python-build.20220608173628.63365.log

Last 10 log lines:
checking for --with-cxx-main=<compiler>... no
checking for clang++... no
configure:

  By default, distutils will build C++ extension modules with "clang++".
  If this is not intended, then set CXX on the configure command line.

checking for the platform triplet based on compiler characteristics... darwin
configure: error: internal configure error for the platform triplet, please file a bug report
make: *** No targets specified and no makefile found.  Stop.

@knaidoo29
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@gunesmes I've just checked TravisCI which does the build testing for mistree. In that, only python versions 2.7, 3.4, 3.5 and 3.6 are tested so perhaps try with 3.6 -- although from what you've said I don't expect this will change anything.

It's unclear to me whether this is an issue with mistree or an issue with python and M1, I'm leaning towards the latter as I'm seeing a lot of issues coming up of a similar nature and if it is this then it's super hard for me to test as I don't have an m1 machine.

The only other thing I can think of to check is whether you've installed gfortran, this is needed to compile the fortran subroutines.

@wanghanruibaba
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I have encountered the same problem. May I ask if it has been resolved

@knaidoo29
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Hi @wanghanruibaba the latest version of mistree should run on python versions <= 3.9, I remember some issues popping up in one of the versions but I don't remember why. So there are two options:

  1. Install mistree on an earlier version of python <= 3.9
  2. Try to install the python only version which removes the fortran subroutines. You can find this in the pure_python branch which is here: https://github.com/knaidoo29/mistree/tree/pure_python . Mistree should run the same, the only drawback is you will not be able to create Levy Flight simulations but if you are only interested in the MST functionality then this should not be an issue.

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@gunesmes @knaidoo29 @wanghanruibaba