diff --git a/FFI.html b/FFI.html index ff4d1120..bf154693 100644 --- a/FFI.html +++ b/FFI.html @@ -107,7 +107,7 @@

Defined Under Namespace

diff --git a/FFI/Pointer.html b/FFI/Pointer.html index cfcd030a..309821e4 100644 --- a/FFI/Pointer.html +++ b/FFI/Pointer.html @@ -194,7 +194,7 @@

diff --git a/FFI/Struct.html b/FFI/Struct.html index a8ad6b86..55e060cf 100644 --- a/FFI/Struct.html +++ b/FFI/Struct.html @@ -300,7 +300,7 @@

diff --git a/HTS.html b/HTS.html index f94fb111..f202cb97 100644 --- a/HTS.html +++ b/HTS.html @@ -383,7 +383,7 @@

diff --git a/HTS/Bam.html b/HTS/Bam.html index 0c39c01d..5f820f66 100644 --- a/HTS/Bam.html +++ b/HTS/Bam.html @@ -3059,7 +3059,7 @@

diff --git a/HTS/Bam/Aux.html b/HTS/Bam/Aux.html index c9e8b6ef..92c457b8 100644 --- a/HTS/Bam/Aux.html +++ b/HTS/Bam/Aux.html @@ -826,7 +826,7 @@

diff --git a/HTS/Bam/Cigar.html b/HTS/Bam/Cigar.html index e6692ce5..5fa963bf 100644 --- a/HTS/Bam/Cigar.html +++ b/HTS/Bam/Cigar.html @@ -771,7 +771,7 @@

diff --git a/HTS/Bam/Flag.html b/HTS/Bam/Flag.html index af2cc877..3eeaf1f1 100644 --- a/HTS/Bam/Flag.html +++ b/HTS/Bam/Flag.html @@ -1681,7 +1681,7 @@

diff --git a/HTS/Bam/Header.html b/HTS/Bam/Header.html index a7094b48..2cae20ea 100644 --- a/HTS/Bam/Header.html +++ b/HTS/Bam/Header.html @@ -1230,7 +1230,7 @@

diff --git a/HTS/Bam/HeaderRecord.html b/HTS/Bam/HeaderRecord.html index 372ab932..ade0d1c8 100644 --- a/HTS/Bam/HeaderRecord.html +++ b/HTS/Bam/HeaderRecord.html @@ -193,7 +193,7 @@

diff --git a/HTS/Bam/Record.html b/HTS/Bam/Record.html index 6b160975..72b2a0ad 100644 --- a/HTS/Bam/Record.html +++ b/HTS/Bam/Record.html @@ -3326,7 +3326,7 @@

diff --git a/HTS/Bcf.html b/HTS/Bcf.html index b2028db6..e4ad0219 100644 --- a/HTS/Bcf.html +++ b/HTS/Bcf.html @@ -2881,7 +2881,7 @@

diff --git a/HTS/Bcf/Format.html b/HTS/Bcf/Format.html index da328f0d..4bc905b3 100644 --- a/HTS/Bcf/Format.html +++ b/HTS/Bcf/Format.html @@ -890,7 +890,7 @@

diff --git a/HTS/Bcf/Header.html b/HTS/Bcf/Header.html index 122aa9b5..15296682 100644 --- a/HTS/Bcf/Header.html +++ b/HTS/Bcf/Header.html @@ -1188,7 +1188,7 @@

diff --git a/HTS/Bcf/HeaderRecord.html b/HTS/Bcf/HeaderRecord.html index 7ecac5c0..1e09983c 100644 --- a/HTS/Bcf/HeaderRecord.html +++ b/HTS/Bcf/HeaderRecord.html @@ -475,7 +475,7 @@

diff --git a/HTS/Bcf/Info.html b/HTS/Bcf/Info.html index f2721259..a6d49e73 100644 --- a/HTS/Bcf/Info.html +++ b/HTS/Bcf/Info.html @@ -912,7 +912,7 @@

diff --git a/HTS/Bcf/Record.html b/HTS/Bcf/Record.html index 81934f0b..ef9e1f62 100644 --- a/HTS/Bcf/Record.html +++ b/HTS/Bcf/Record.html @@ -1488,7 +1488,7 @@

diff --git a/HTS/Error.html b/HTS/Error.html index 81bf6ef6..66cb3be8 100644 --- a/HTS/Error.html +++ b/HTS/Error.html @@ -114,7 +114,7 @@ diff --git a/HTS/Faidx.html b/HTS/Faidx.html index b11968af..102f5e15 100644 --- a/HTS/Faidx.html +++ b/HTS/Faidx.html @@ -1368,7 +1368,7 @@

diff --git a/HTS/Faidx/Sequence.html b/HTS/Faidx/Sequence.html index baf69eb8..200e01c4 100644 --- a/HTS/Faidx/Sequence.html +++ b/HTS/Faidx/Sequence.html @@ -635,7 +635,7 @@

diff --git a/HTS/Hts.html b/HTS/Hts.html index e97b66c0..8a9b3000 100644 --- a/HTS/Hts.html +++ b/HTS/Hts.html @@ -925,7 +925,7 @@

diff --git a/HTS/LibHTS.html b/HTS/LibHTS.html index a527044a..813ad419 100644 --- a/HTS/LibHTS.html +++ b/HTS/LibHTS.html @@ -33605,13 +33605,13 @@ 

 
 
-11
-12
-13
-14
+19 +20 +21 +22 - 
# File 'lib/hts/libhts/tbx.rb', line 11
+      
# File 'lib/hts/libhts/tbx.rb', line 19
 
 attach_function \
 :hts_get_bgzfp,
@@ -42594,13 +42594,13 @@ 

       
 
 
-65
-66
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-68

+73
+74
+75
+76

     
     
-      
# File 'lib/hts/libhts/tbx.rb', line 65
+      
# File 'lib/hts/libhts/tbx.rb', line 73
 
 attach_function \
 :tbx_destroy,
@@ -42655,13 +42655,13 @@ 

       
 
 
-22
-23
-24
-25

+30
+31
+32
+33

     
     
-      
# File 'lib/hts/libhts/tbx.rb', line 22
+      
# File 'lib/hts/libhts/tbx.rb', line 30
 
 attach_function \
 :tbx_index,
@@ -42716,13 +42716,13 @@ 

       
 
 
-27
-28
-29
-30

+35
+36
+37
+38

     
     
-      
# File 'lib/hts/libhts/tbx.rb', line 27
+      
# File 'lib/hts/libhts/tbx.rb', line 35
 
 attach_function \
 :tbx_index_build,
@@ -42777,13 +42777,13 @@ 

       
 
 
-32
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-35

+40
+41
+42
+43

     
     
-      
# File 'lib/hts/libhts/tbx.rb', line 32
+      
# File 'lib/hts/libhts/tbx.rb', line 40
 
 attach_function \
 :tbx_index_build2,
@@ -42838,13 +42838,13 @@ 

       
 
 
-37
-38
-39
-40

+45
+46
+47
+48

     
     
-      
# File 'lib/hts/libhts/tbx.rb', line 37
+      
# File 'lib/hts/libhts/tbx.rb', line 45
 
 attach_function \
 :tbx_index_build3,
@@ -42899,13 +42899,13 @@ 

       
 
 
-43
-44
-45
-46

+51
+52
+53
+54

     
     
-      
# File 'lib/hts/libhts/tbx.rb', line 43
+      
# File 'lib/hts/libhts/tbx.rb', line 51
 
 attach_function \
 :tbx_index_load,
@@ -42960,13 +42960,13 @@ 

       
 
 
-49
-50
-51
-52

+57
+58
+59
+60

     
     
-      
# File 'lib/hts/libhts/tbx.rb', line 49
+      
# File 'lib/hts/libhts/tbx.rb', line 57
 
 attach_function \
 :tbx_index_load2,
@@ -43021,13 +43021,13 @@ 

       
 
 
-55
-56
-57
-58

+63
+64
+65
+66

     
     
-      
# File 'lib/hts/libhts/tbx.rb', line 55
+      
# File 'lib/hts/libhts/tbx.rb', line 63
 
 attach_function \
 :tbx_index_load3,
@@ -43204,13 +43204,13 @@ 

       
 
 
-5
-6
-7
-8

+13
+14
+15
+16

     
     
-      
# File 'lib/hts/libhts/tbx.rb', line 5
+      
# File 'lib/hts/libhts/tbx.rb', line 13
 
 attach_function \
 :tbx_name2id,
@@ -43265,13 +43265,13 @@ 

       
 
 
-16
-17
-18
-19

+24
+25
+26
+27

     
     
-      
# File 'lib/hts/libhts/tbx.rb', line 16
+      
# File 'lib/hts/libhts/tbx.rb', line 24
 
 attach_function \
 :tbx_readrec,
@@ -43326,13 +43326,13 @@ 

       
 
 
-60
-61
-62
-63

+68
+69
+70
+71

     
     
-      
# File 'lib/hts/libhts/tbx.rb', line 60
+      
# File 'lib/hts/libhts/tbx.rb', line 68
 
 attach_function \
 :tbx_seqnames,
@@ -43852,7 +43852,7 @@ 

 
 
       
diff --git a/HTS/LibHTS/BGZF.html b/HTS/LibHTS/BGZF.html
index 7e5af46d..07bbb684 100644
--- a/HTS/LibHTS/BGZF.html
+++ b/HTS/LibHTS/BGZF.html
@@ -125,7 +125,7 @@ 
Overview

 

 
       
diff --git a/HTS/LibHTS/Bam1.html b/HTS/LibHTS/Bam1.html
index 33bcb82d..db935beb 100644
--- a/HTS/LibHTS/Bam1.html
+++ b/HTS/LibHTS/Bam1.html
@@ -200,7 +200,7 @@ 

 
 
       
diff --git a/HTS/LibHTS/Bam1Core.html b/HTS/LibHTS/Bam1Core.html
index 833f4b57..7748e256 100644
--- a/HTS/LibHTS/Bam1Core.html
+++ b/HTS/LibHTS/Bam1Core.html
@@ -124,7 +124,7 @@ 
Methods inherited from 
-  Generated on Fri Sep 13 02:21:58 2024 by
+  Generated on Fri Sep 13 02:32:53 2024 by
   yard
   0.9.37 (ruby-3.3.5).
 
diff --git a/HTS/LibHTS/BamPileup1.html b/HTS/LibHTS/BamPileup1.html
index 7a229291..20a4ba6f 100644
--- a/HTS/LibHTS/BamPileup1.html
+++ b/HTS/LibHTS/BamPileup1.html
@@ -114,7 +114,7 @@
 
 
       
diff --git a/HTS/LibHTS/BamPileupCd.html b/HTS/LibHTS/BamPileupCd.html
index 82ca20df..c813ff9d 100644
--- a/HTS/LibHTS/BamPileupCd.html
+++ b/HTS/LibHTS/BamPileupCd.html
@@ -114,7 +114,7 @@
 
 
       
diff --git a/HTS/LibHTS/Bcf1.html b/HTS/LibHTS/Bcf1.html
index ff205df7..3da7b172 100644
--- a/HTS/LibHTS/Bcf1.html
+++ b/HTS/LibHTS/Bcf1.html
@@ -183,7 +183,7 @@ 

 
 
       
diff --git a/HTS/LibHTS/BcfDec.html b/HTS/LibHTS/BcfDec.html
index 497e1865..314a8796 100644
--- a/HTS/LibHTS/BcfDec.html
+++ b/HTS/LibHTS/BcfDec.html
@@ -124,7 +124,7 @@ 
Methods inherited from 
-  Generated on Fri Sep 13 02:21:58 2024 by
+  Generated on Fri Sep 13 02:32:53 2024 by
   yard
   0.9.37 (ruby-3.3.5).
 
diff --git a/HTS/LibHTS/BcfFmt.html b/HTS/LibHTS/BcfFmt.html
index aa454e4d..c09b361d 100644
--- a/HTS/LibHTS/BcfFmt.html
+++ b/HTS/LibHTS/BcfFmt.html
@@ -114,7 +114,7 @@
 
 
       
diff --git a/HTS/LibHTS/BcfHdr.html b/HTS/LibHTS/BcfHdr.html
index 57002aa3..e49f2b29 100644
--- a/HTS/LibHTS/BcfHdr.html
+++ b/HTS/LibHTS/BcfHdr.html
@@ -183,7 +183,7 @@ 

 
 
       
diff --git a/HTS/LibHTS/BcfHrec.html b/HTS/LibHTS/BcfHrec.html
index 3b009ae7..87db46a3 100644
--- a/HTS/LibHTS/BcfHrec.html
+++ b/HTS/LibHTS/BcfHrec.html
@@ -194,7 +194,7 @@ 

 
 
       
diff --git a/HTS/LibHTS/BcfIdinfo.html b/HTS/LibHTS/BcfIdinfo.html
index ecd164ca..3de1e340 100644
--- a/HTS/LibHTS/BcfIdinfo.html
+++ b/HTS/LibHTS/BcfIdinfo.html
@@ -124,7 +124,7 @@ 
Methods inherited from 
-  Generated on Fri Sep 13 02:21:58 2024 by
+  Generated on Fri Sep 13 02:32:53 2024 by
   yard
   0.9.37 (ruby-3.3.5).
 
diff --git a/HTS/LibHTS/BcfIdpair.html b/HTS/LibHTS/BcfIdpair.html
index 1f874b34..87c0032f 100644
--- a/HTS/LibHTS/BcfIdpair.html
+++ b/HTS/LibHTS/BcfIdpair.html
@@ -124,7 +124,7 @@ 
Methods inherited from 
-  Generated on Fri Sep 13 02:21:58 2024 by
+  Generated on Fri Sep 13 02:32:53 2024 by
   yard
   0.9.37 (ruby-3.3.5).
 
diff --git a/HTS/LibHTS/BcfInfo.html b/HTS/LibHTS/BcfInfo.html
index e22908f7..4454e434 100644
--- a/HTS/LibHTS/BcfInfo.html
+++ b/HTS/LibHTS/BcfInfo.html
@@ -114,7 +114,7 @@
 
 
       
diff --git a/HTS/LibHTS/BcfVariant.html b/HTS/LibHTS/BcfVariant.html
index d17864ed..9bcade96 100644
--- a/HTS/LibHTS/BcfVariant.html
+++ b/HTS/LibHTS/BcfVariant.html
@@ -135,7 +135,7 @@ 
Methods inherited from 
-  Generated on Fri Sep 13 02:21:58 2024 by
+  Generated on Fri Sep 13 02:32:53 2024 by
   yard
   0.9.37 (ruby-3.3.5).
 
diff --git a/HTS/LibHTS/Faidx.html b/HTS/LibHTS/Faidx.html
index 03811b3f..f9dd7b40 100644
--- a/HTS/LibHTS/Faidx.html
+++ b/HTS/LibHTS/Faidx.html
@@ -204,7 +204,7 @@ 

 
 
       
diff --git a/HTS/LibHTS/HFile.html b/HTS/LibHTS/HFile.html
index 8ccc8893..a8f3a06a 100644
--- a/HTS/LibHTS/HFile.html
+++ b/HTS/LibHTS/HFile.html
@@ -125,7 +125,7 @@ 
Overview

 

 
       
diff --git a/HTS/LibHTS/HtsFile.html b/HTS/LibHTS/HtsFile.html
index 4d1dec56..9a7d5261 100644
--- a/HTS/LibHTS/HtsFile.html
+++ b/HTS/LibHTS/HtsFile.html
@@ -114,7 +114,7 @@
 
 
       
diff --git a/HTS/LibHTS/HtsFormat.html b/HTS/LibHTS/HtsFormat.html
index 6391c3ba..51809e26 100644
--- a/HTS/LibHTS/HtsFormat.html
+++ b/HTS/LibHTS/HtsFormat.html
@@ -124,7 +124,7 @@ 
Methods inherited from 
-  Generated on Fri Sep 13 02:21:58 2024 by
+  Generated on Fri Sep 13 02:32:53 2024 by
   yard
   0.9.37 (ruby-3.3.5).
 
diff --git a/HTS/LibHTS/HtsIdx.html b/HTS/LibHTS/HtsIdx.html
index 03f05ab4..06b96c84 100644
--- a/HTS/LibHTS/HtsIdx.html
+++ b/HTS/LibHTS/HtsIdx.html
@@ -204,7 +204,7 @@ 

 
 
       
diff --git a/HTS/LibHTS/HtsItr.html b/HTS/LibHTS/HtsItr.html
index 9343dcf2..4a8d84e9 100644
--- a/HTS/LibHTS/HtsItr.html
+++ b/HTS/LibHTS/HtsItr.html
@@ -194,7 +194,7 @@ 

 
 
       
diff --git a/HTS/LibHTS/HtsOpt.html b/HTS/LibHTS/HtsOpt.html
index 0b56c9d2..d9c3e0cb 100644
--- a/HTS/LibHTS/HtsOpt.html
+++ b/HTS/LibHTS/HtsOpt.html
@@ -124,7 +124,7 @@ 
Methods inherited from 
-  Generated on Fri Sep 13 02:21:58 2024 by
+  Generated on Fri Sep 13 02:32:53 2024 by
   yard
   0.9.37 (ruby-3.3.5).
 
diff --git a/HTS/LibHTS/HtsReglist.html b/HTS/LibHTS/HtsReglist.html
index ea0e2f8d..b4accc80 100644
--- a/HTS/LibHTS/HtsReglist.html
+++ b/HTS/LibHTS/HtsReglist.html
@@ -124,7 +124,7 @@ 
Methods inherited from 
-  Generated on Fri Sep 13 02:21:58 2024 by
+  Generated on Fri Sep 13 02:32:53 2024 by
   yard
   0.9.37 (ruby-3.3.5).
 
diff --git a/HTS/LibHTS/HtsTpool.html b/HTS/LibHTS/HtsTpool.html
index 13dc575f..c70ab017 100644
--- a/HTS/LibHTS/HtsTpool.html
+++ b/HTS/LibHTS/HtsTpool.html
@@ -183,7 +183,7 @@ 

 
 
       
diff --git a/HTS/LibHTS/KSeq.html b/HTS/LibHTS/KSeq.html
index 0af066cf..e04859d3 100644
--- a/HTS/LibHTS/KSeq.html
+++ b/HTS/LibHTS/KSeq.html
@@ -124,7 +124,7 @@ 
Methods inherited from 
-  Generated on Fri Sep 13 02:21:58 2024 by
+  Generated on Fri Sep 13 02:32:53 2024 by
   yard
   0.9.37 (ruby-3.3.5).
 
diff --git a/HTS/LibHTS/KString.html b/HTS/LibHTS/KString.html
index f557fb47..e57b92e6 100644
--- a/HTS/LibHTS/KString.html
+++ b/HTS/LibHTS/KString.html
@@ -135,7 +135,7 @@ 
Methods inherited from 
-  Generated on Fri Sep 13 02:21:58 2024 by
+  Generated on Fri Sep 13 02:32:53 2024 by
   yard
   0.9.37 (ruby-3.3.5).
 
diff --git a/HTS/LibHTS/SamHdr.html b/HTS/LibHTS/SamHdr.html
index 80242bb2..843b1934 100644
--- a/HTS/LibHTS/SamHdr.html
+++ b/HTS/LibHTS/SamHdr.html
@@ -194,7 +194,7 @@ 

 
 
       
diff --git a/HTS/LibHTS/Tbx.html b/HTS/LibHTS/Tbx.html
index 09fc7edb..866645df 100644
--- a/HTS/LibHTS/Tbx.html
+++ b/HTS/LibHTS/Tbx.html
@@ -183,7 +183,7 @@ 

 
 
       
diff --git a/HTS/LibHTS/TbxConf.html b/HTS/LibHTS/TbxConf.html
index 372640f4..0f65c311 100644
--- a/HTS/LibHTS/TbxConf.html
+++ b/HTS/LibHTS/TbxConf.html
@@ -124,7 +124,7 @@ 
Methods inherited from 
-  Generated on Fri Sep 13 02:21:58 2024 by
+  Generated on Fri Sep 13 02:32:53 2024 by
   yard
   0.9.37 (ruby-3.3.5).
 
diff --git a/HTS/Tabix.html b/HTS/Tabix.html
index 6f9466bf..cf689a88 100644
--- a/HTS/Tabix.html
+++ b/HTS/Tabix.html
@@ -1010,7 +1010,7 @@ 

 
 
       
diff --git a/_index.html b/_index.html
index 843a4538..a1ae5b75 100644
--- a/_index.html
+++ b/_index.html
@@ -544,7 +544,7 @@ 
Namespace Listing A-Z

 
 
       
diff --git a/file.README.html b/file.README.html
index 29cfba16..934f76f3 100644
--- a/file.README.html
+++ b/file.README.html
@@ -314,7 +314,7 @@ 
License

 
 
       
diff --git a/index.html b/index.html
index 74a9b6d7..77215ff1 100644
--- a/index.html
+++ b/index.html
@@ -314,7 +314,7 @@ 
License

 
 
       
diff --git a/top-level-namespace.html b/top-level-namespace.html
index 29d2e195..7f9a00fc 100644
--- a/top-level-namespace.html
+++ b/top-level-namespace.html
@@ -100,7 +100,7 @@ 
Defined Under Namespace