Test failures on master

[ZedThree]

Hello, I just cloned master and ran:

python3 -m venv testvenv
source testvenv/bin/activate
pip install -U pip
pip install -e .
pip install pytest
pytest

and got the following test failures/errors:

===================================================================================================================================================== warnings summary ======================================================================================================================================================
pleque/core/equilibrium.py:215: 5 tests with warnings
tests/compu_test.py: 1 test with warning
tests/test_2Dinterpolation.py: 6 tests with warnings
tests/test_cocos.py: 48 tests with warnings
tests/test_coordinates.py: 6 tests with warnings
tests/test_equilibria.py: 12 tests with warnings
tests/test_gfile.py: 12 tests with warnings
tests/test_io.py: 6 tests with warnings
tests/test_surface_param.py: 1 test with warning
  /home/peter/Codes/pleque/pleque/core/equilibrium.py:215: DeprecationWarning: np.asscalar(a) is deprecated since NumPy v1.16, use a.item() instead

pleque/core/coordinates.py:463
  /home/peter/Codes/pleque/pleque/core/coordinates.py:463: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3,and in 3.9 it will stop working

pleque/io/metis.py:37
  /home/peter/Codes/pleque/pleque/io/metis.py:37: PendingDeprecationWarning: dropping variables using `drop` will be deprecated; using drop_vars is encouraged.

testvenv/lib64/python3.7/site-packages/numpy/lib/type_check.py:277
  /home/peter/Codes/pleque/testvenv/lib64/python3.7/site-packages/numpy/lib/type_check.py:277: FutureWarning: elementwise == comparison failed and returning scalar instead; this will raise an error or perform elementwise comparison in the future.

testvenv/lib64/python3.7/site-packages/omas/omas_setup.py:16
  /home/peter/Codes/pleque/testvenv/lib64/python3.7/site-packages/omas/omas_setup.py:16: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3,and in 3.9 it will stop working

testvenv/lib64/python3.7/site-packages/omas/omas_hdc.py:9
  /home/peter/Codes/pleque/testvenv/lib64/python3.7/site-packages/omas/omas_hdc.py:9: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3,and in 3.9 it will stop working

-- Docs: https://docs.pytest.org/en/latest/warnings.html
================================================================================================================================================== short test summary info ==================================================================================================================================================
FAILED tests/compu_test.py::test_compu - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 1 has size 2
FAILED tests/surfaces_test.py::test_surfs - assert array([], shape=(1, 0), dtype=float64) is None
FAILED tests/test_cocos.py::test_directions[5-1] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 1 has size 2
FAILED tests/test_cocos.py::test_directions[5-2] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 1 has size 2
FAILED tests/test_cocos.py::test_directions[5-3] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 1 has size 2
FAILED tests/test_cocos.py::test_directions[5-4] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 1 has size 2
FAILED tests/test_cocos.py::test_coordinates_transforms[5-1] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 1 has size 2
FAILED tests/test_cocos.py::test_coordinates_transforms[5-2] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 1 has size 2
FAILED tests/test_cocos.py::test_coordinates_transforms[5-3] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 1 has size 2
FAILED tests/test_cocos.py::test_coordinates_transforms[5-4] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 1 has size 2
FAILED tests/test_cocos.py::test_coordinates_transforms[5-5] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 1 has size 2
FAILED tests/test_cocos.py::test_coordinates_transforms[5-6] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 1 has size 2
FAILED tests/test_cocos.py::test_coordinates_transforms[5-7] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 1 has size 2
FAILED tests/test_cocos.py::test_coordinates_transforms[5-8] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 1 has size 2
FAILED tests/test_cocos.py::test_cocos_consistency[5-1] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 1 has size 2
FAILED tests/test_cocos.py::test_cocos_consistency[5-2] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 1 has size 2
FAILED tests/test_cocos.py::test_cocos_consistency[5-3] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 1 has size 2
FAILED tests/test_cocos.py::test_cocos_consistency[5-4] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 1 has size 2
FAILED tests/test_cocos.py::test_cocos_consistency[5-5] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 1 has size 2
FAILED tests/test_cocos.py::test_cocos_consistency[5-6] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 1 has size 2
FAILED tests/test_cocos.py::test_cocos_consistency[5-7] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 1 has size 2
FAILED tests/test_cocos.py::test_cocos_consistency[5-8] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 1 has size 2
FAILED tests/test_equilibria.py::test_equilibria[4] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 2 has size 2
FAILED tests/test_equilibria.py::test_equilibria[5] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 1 has size 2
FAILED tests/test_gfile.py::test_calculated_profiles[5] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 1 has size 2
FAILED tests/test_surface_param.py::test_q_profiles - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 1 has size 2
ERROR tests/test_2Dinterpolation.py::test_surfacefunction[4-data0-coord10-coord20-3-1] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 2 has size 2
ERROR tests/test_2Dinterpolation.py::test_surfacefunction[4-data1-coord11-coord21-3-0] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 2 has size 2
ERROR tests/test_2Dinterpolation.py::test_surfacefunction[5-data0-coord10-coord20-3-1] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 1 has size 2
ERROR tests/test_2Dinterpolation.py::test_surfacefunction[5-data1-coord11-coord21-3-0] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 1 has size 2
ERROR tests/test_coordinates.py::test_coordinates[4] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 2 has size 2
ERROR tests/test_coordinates.py::test_coordinates[5] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 1 has size 2
ERROR tests/test_equilibria.py::test_critical[4] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 2 has size 2
ERROR tests/test_equilibria.py::test_eq_properties[4] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 2 has size 2
ERROR tests/test_equilibria.py::test_critical[5] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 1 has size 2
ERROR tests/test_equilibria.py::test_eq_properties[5] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 1 has size 2
ERROR tests/test_gfile.py::test_from_to_gfile[4] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 2 has size 2
ERROR tests/test_gfile.py::test_from_to_gfile[5] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 1 has size 2
ERROR tests/test_io.py::test_dict2xarray[4] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 2 has size 2
ERROR tests/test_io.py::test_dict2xarray[5] - ValueError: all the input array dimensions for the concatenation axis must match exactly, but along dimension 1, the array at index 0 has size 0 and the array at index 1 has size 2
======================================================================================================================= 26 failed, 56 passed, 1 skipped, 102 warnings, 14 errors in 226.26s (0:03:46) =======================================================================================================================

Happy to attach the full failure log if that would be helpful!

[kripnerl]

Hi Peter,

thank you for the report and for the interest. Please use the unstable branch instead (I've just pushed it).

git fetch
git checkout unstable
pytest
...
====================================== 4 failed, 105 passed, 119 warnings in 298.75s (0:04:58) ======================================

(failing is some local COMPASS stuff due to the lack of mySQL module and VPN connection and unmounted infrastructure.

Unfortunately, I and my colleague agreed to have some review process which we are not able to fulfil due to time reasons. So the main development is done on unstable branch :-). And as the code is used only by the local community there was no problem.

To see some examples please see:
https://pleque.readthedocs.io/en/feature-improve_doc/fuzenet_phd_link.html#Field-line-tracing

I will get things working on the master ASAP.

[kripnerl]

@ZedThree Don't hesitate to ask if you have any questions.

[peterkamatej]

Máš zákazníka :-) pá 27. 3. 2020 v 9:35 odesílatel kripnerl <[email protected]> napsal:

…

@ZedThree <https://github.com/ZedThree> Don't hesitate to ask if you have any questions. — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#53 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AC3DNKQ7RACIWBP256U6ECDRJRQNXANCNFSM4LUMOA2A> .

[ZedThree]

Thanks, I will check that out! There's no rush so please don't go out of your way 😄

Hope you're all keeping safe.

[kripnerl]

The code in mater is now updated and the documentation is also up-to-date (e9a140c)

@ZedThree Have you find somehow useful using this repo?