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config.log
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config.log
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This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by rjags configure 4, which was
generated by GNU Autoconf 2.69. Invocation command line was
$ ./configure
## --------- ##
## Platform. ##
## --------- ##
hostname = SUN1018225
uname -m = arm64
uname -r = 21.6.0
uname -s = Darwin
uname -v = Darwin Kernel Version 21.6.0: Thu Sep 29 20:13:56 PDT 2022; root:xnu-8020.240.7~1/RELEASE_ARM64_T6000
/usr/bin/uname -p = arm
/bin/uname -X = unknown
/bin/arch = unknown
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = Mach kernel version:
Darwin Kernel Version 21.6.0: Thu Sep 29 20:13:56 PDT 2022; root:xnu-8020.240.7~1/RELEASE_ARM64_T6000
Kernel configured for up to 10 processors.
10 processors are physically available.
10 processors are logically available.
Processor type: arm64e (ARM64E)
Processors active: 0 1 2 3 4 5 6 7 8 9
Primary memory available: 64.00 gigabytes
Default processor set: 909 tasks, 4228 threads, 10 processors
Load average: 7.34, Mach factor: 5.58
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown
PATH: /opt/R/arm64/bin
PATH: /opt/homebrew/bin
PATH: /opt/homebrew/sbin
PATH: /usr/local/bin
PATH: /usr/bin
PATH: /bin
PATH: /usr/sbin
PATH: /sbin
PATH: /Library/TeX/texbin
PATH: /opt/X11/bin
PATH: /Library/Apple/usr/bin
PATH: /usr/ucb
PATH: /usr/local/bin/
PATH: /Users/matthewdenwood/Applications/quarto/bin
PATH: /usr/texbin
PATH: /Applications/RStudio.app/Contents/MacOS/quarto/bin
PATH: /Applications/RStudio.app/Contents/MacOS
PATH: /Applications/RStudio.app/Contents/MacOS
## ----------- ##
## Core tests. ##
## ----------- ##
configure:2099: checking for pkg-config
configure:2118: found /opt/R/arm64/bin/pkg-config
configure:2130: result: /opt/R/arm64/bin/pkg-config
configure:2162: WARNING: pkg-config file for jags 4 unavailable
configure:2164: WARNING: Consider adding the directory containing `jags.pc`
configure:2166: WARNING: to the PKG_CONFIG_PATH environment variable
configure:2175: Attempting legacy configuration of rjags
configure:2199: checking for jags
configure:2217: found /usr/local/bin/jags
configure:2229: result: /usr/local/bin/jags
configure:2431: checking for C++ compiler version
configure:2440: clang++ -arch arm64 -std=gnu++14 --version >&5
Apple clang version 14.0.0 (clang-1400.0.29.202)
Target: arm64-apple-darwin21.6.0
Thread model: posix
InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin
configure:2451: $? = 0
configure:2440: clang++ -arch arm64 -std=gnu++14 -v >&5
Apple clang version 14.0.0 (clang-1400.0.29.202)
Target: arm64-apple-darwin21.6.0
Thread model: posix
InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin
clang: warning: argument unused during compilation: '-std=gnu++14' [-Wunused-command-line-argument]
configure:2451: $? = 0
configure:2440: clang++ -arch arm64 -std=gnu++14 -V >&5
clang: error: argument to '-V' is missing (expected 1 value)
clang: error: no input files
configure:2451: $? = 1
configure:2440: clang++ -arch arm64 -std=gnu++14 -qversion >&5
clang: error: unknown argument '-qversion'; did you mean '--version'?
clang: error: no input files
configure:2451: $? = 1
configure:2471: checking whether the C++ compiler works
configure:2493: clang++ -arch arm64 -std=gnu++14 -falign-functions=64 -Wall -g -O2 -I/usr/local/include/JAGS conftest.cpp >&5
configure:2497: $? = 0
configure:2545: result: yes
configure:2548: checking for C++ compiler default output file name
configure:2550: result: a.out
configure:2556: checking for suffix of executables
configure:2563: clang++ -arch arm64 -std=gnu++14 -o conftest -falign-functions=64 -Wall -g -O2 -I/usr/local/include/JAGS conftest.cpp >&5
configure:2567: $? = 0
configure:2589: result:
configure:2611: checking whether we are cross compiling
configure:2619: clang++ -arch arm64 -std=gnu++14 -o conftest -falign-functions=64 -Wall -g -O2 -I/usr/local/include/JAGS conftest.cpp >&5
configure:2623: $? = 0
configure:2630: ./conftest
configure:2634: $? = 0
configure:2649: result: no
configure:2654: checking for suffix of object files
configure:2676: clang++ -arch arm64 -std=gnu++14 -c -falign-functions=64 -Wall -g -O2 -I/usr/local/include/JAGS conftest.cpp >&5
configure:2680: $? = 0
configure:2701: result: o
configure:2705: checking whether we are using the GNU C++ compiler
configure:2724: clang++ -arch arm64 -std=gnu++14 -c -falign-functions=64 -Wall -g -O2 -I/usr/local/include/JAGS conftest.cpp >&5
configure:2724: $? = 0
configure:2733: result: yes
configure:2742: checking whether clang++ -arch arm64 -std=gnu++14 accepts -g
configure:2762: clang++ -arch arm64 -std=gnu++14 -c -g -I/usr/local/include/JAGS conftest.cpp >&5
configure:2762: $? = 0
configure:2803: result: yes
configure:2832: checking how to run the C++ preprocessor
configure:2859: clang++ -arch arm64 -std=gnu++14 -E -I/usr/local/include/JAGS conftest.cpp
configure:2859: $? = 0
configure:2873: clang++ -arch arm64 -std=gnu++14 -E -I/usr/local/include/JAGS conftest.cpp
conftest.cpp:9:10: fatal error: 'ac_nonexistent.h' file not found
#include <ac_nonexistent.h>
^~~~~~~~~~~~~~~~~~
1 error generated.
configure:2873: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "rjags"
| #define PACKAGE_TARNAME "rjags"
| #define PACKAGE_VERSION "4"
| #define PACKAGE_STRING "rjags 4"
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:2898: result: clang++ -arch arm64 -std=gnu++14 -E
configure:2918: clang++ -arch arm64 -std=gnu++14 -E -I/usr/local/include/JAGS conftest.cpp
configure:2918: $? = 0
configure:2932: clang++ -arch arm64 -std=gnu++14 -E -I/usr/local/include/JAGS conftest.cpp
conftest.cpp:9:10: fatal error: 'ac_nonexistent.h' file not found
#include <ac_nonexistent.h>
^~~~~~~~~~~~~~~~~~
1 error generated.
configure:2932: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "rjags"
| #define PACKAGE_TARNAME "rjags"
| #define PACKAGE_VERSION "4"
| #define PACKAGE_STRING "rjags 4"
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:2961: checking for grep that handles long lines and -e
configure:3019: result: /usr/bin/grep
configure:3024: checking for egrep
configure:3086: result: /usr/bin/grep -E
configure:3091: checking for ANSI C header files
configure:3111: clang++ -arch arm64 -std=gnu++14 -c -falign-functions=64 -Wall -g -O2 -I/usr/local/include/JAGS conftest.cpp >&5
configure:3111: $? = 0
configure:3184: clang++ -arch arm64 -std=gnu++14 -o conftest -falign-functions=64 -Wall -g -O2 -I/usr/local/include/JAGS conftest.cpp >&5
configure:3184: $? = 0
configure:3184: ./conftest
configure:3184: $? = 0
configure:3195: result: yes
configure:3208: checking for sys/types.h
configure:3208: clang++ -arch arm64 -std=gnu++14 -c -falign-functions=64 -Wall -g -O2 -I/usr/local/include/JAGS conftest.cpp >&5
configure:3208: $? = 0
configure:3208: result: yes
configure:3208: checking for sys/stat.h
configure:3208: clang++ -arch arm64 -std=gnu++14 -c -falign-functions=64 -Wall -g -O2 -I/usr/local/include/JAGS conftest.cpp >&5
configure:3208: $? = 0
configure:3208: result: yes
configure:3208: checking for stdlib.h
configure:3208: clang++ -arch arm64 -std=gnu++14 -c -falign-functions=64 -Wall -g -O2 -I/usr/local/include/JAGS conftest.cpp >&5
configure:3208: $? = 0
configure:3208: result: yes
configure:3208: checking for string.h
configure:3208: clang++ -arch arm64 -std=gnu++14 -c -falign-functions=64 -Wall -g -O2 -I/usr/local/include/JAGS conftest.cpp >&5
configure:3208: $? = 0
configure:3208: result: yes
configure:3208: checking for memory.h
configure:3208: clang++ -arch arm64 -std=gnu++14 -c -falign-functions=64 -Wall -g -O2 -I/usr/local/include/JAGS conftest.cpp >&5
configure:3208: $? = 0
configure:3208: result: yes
configure:3208: checking for strings.h
configure:3208: clang++ -arch arm64 -std=gnu++14 -c -falign-functions=64 -Wall -g -O2 -I/usr/local/include/JAGS conftest.cpp >&5
configure:3208: $? = 0
configure:3208: result: yes
configure:3208: checking for inttypes.h
configure:3208: clang++ -arch arm64 -std=gnu++14 -c -falign-functions=64 -Wall -g -O2 -I/usr/local/include/JAGS conftest.cpp >&5
configure:3208: $? = 0
configure:3208: result: yes
configure:3208: checking for stdint.h
configure:3208: clang++ -arch arm64 -std=gnu++14 -c -falign-functions=64 -Wall -g -O2 -I/usr/local/include/JAGS conftest.cpp >&5
configure:3208: $? = 0
configure:3208: result: yes
configure:3208: checking for unistd.h
configure:3208: clang++ -arch arm64 -std=gnu++14 -c -falign-functions=64 -Wall -g -O2 -I/usr/local/include/JAGS conftest.cpp >&5
configure:3208: $? = 0
configure:3208: result: yes
configure:3220: checking Console.h usability
configure:3220: clang++ -arch arm64 -std=gnu++14 -c -falign-functions=64 -Wall -g -O2 -I/usr/local/include/JAGS conftest.cpp >&5
configure:3220: $? = 0
configure:3220: result: yes
configure:3220: checking Console.h presence
configure:3220: clang++ -arch arm64 -std=gnu++14 -E -I/usr/local/include/JAGS conftest.cpp
configure:3220: $? = 0
configure:3220: result: yes
configure:3220: checking for Console.h
configure:3220: result: yes
configure:3270: Compile flags are -I/usr/local/include/JAGS
configure:3272: Link flags are -L/usr/local/lib -ljags
configure:3351: checking for gcc
configure:3378: result: clang -arch arm64
configure:3607: checking for C compiler version
configure:3616: clang -arch arm64 --version >&5
Apple clang version 14.0.0 (clang-1400.0.29.202)
Target: arm64-apple-darwin21.6.0
Thread model: posix
InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin
configure:3627: $? = 0
configure:3616: clang -arch arm64 -v >&5
Apple clang version 14.0.0 (clang-1400.0.29.202)
Target: arm64-apple-darwin21.6.0
Thread model: posix
InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin
configure:3627: $? = 0
configure:3616: clang -arch arm64 -V >&5
clang: error: argument to '-V' is missing (expected 1 value)
clang: error: no input files
configure:3627: $? = 1
configure:3616: clang -arch arm64 -qversion >&5
clang: error: unknown argument '-qversion'; did you mean '--version'?
clang: error: no input files
configure:3627: $? = 1
configure:3631: checking whether we are using the GNU C compiler
configure:3650: clang -arch arm64 -c -I/usr/local/include/JAGS -I/opt/R/arm64/include conftest.c >&5
configure:3650: $? = 0
configure:3659: result: yes
configure:3668: checking whether clang -arch arm64 accepts -g
configure:3688: clang -arch arm64 -c -g -I/opt/R/arm64/include conftest.c >&5
configure:3688: $? = 0
configure:3729: result: yes
configure:3746: checking for clang -arch arm64 option to accept ISO C89
configure:3809: clang -arch arm64 -c -I/usr/local/include/JAGS -I/opt/R/arm64/include conftest.c >&5
configure:3809: $? = 0
configure:3822: result: none needed
configure:3843: checking for jags_version in -ljags
configure:3868: clang -arch arm64 -o conftest -I/usr/local/include/JAGS -I/opt/R/arm64/include -L/usr/local/lib conftest.c -ljags >&5
configure:3868: $? = 0
configure:3877: result: yes
configure:3907: checking version of JAGS library
configure:3922: clang++ -arch arm64 -std=gnu++14 -o conftest -I/usr/local/include/JAGS -I/opt/R/arm64/include -L/usr/local/lib -ljags conftest.cpp -ljags >&5
configure:3922: $? = 0
configure:3922: ./conftest
configure:3922: $? = 0
configure:3946: clang++ -arch arm64 -std=gnu++14 -o conftest -I/usr/local/include/JAGS -I/opt/R/arm64/include -L/usr/local/lib -ljags conftest.cpp -ljags >&5
configure:3946: $? = 0
configure:3946: ./conftest
configure:3946: $? = 0
configure:3947: result: OK
configure:4128: creating ./config.status
## ---------------------- ##
## Running config.status. ##
## ---------------------- ##
This file was extended by rjags config.status 4, which was
generated by GNU Autoconf 2.69. Invocation command line was
CONFIG_FILES =
CONFIG_HEADERS =
CONFIG_LINKS =
CONFIG_COMMANDS =
$ ./config.status
on SUN1018225
config.status:732: creating src/Makevars
configure:5285: creating ./config.status
## ---------------------- ##
## Running config.status. ##
## ---------------------- ##
This file was extended by rjags config.status 4, which was
generated by GNU Autoconf 2.69. Invocation command line was
CONFIG_FILES =
CONFIG_HEADERS =
CONFIG_LINKS =
CONFIG_COMMANDS =
$ ./config.status
on SUN1018225
config.status:733: creating src/Makevars
config.status:733: creating R/unix/zzz.R
## ---------------- ##
## Cache variables. ##
## ---------------- ##
ac_cv_c_compiler_gnu=yes
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_header_Console_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_lib_jags_jags_version=yes
ac_cv_objext=o
ac_cv_path_EGREP='/usr/bin/grep -E'
ac_cv_path_GREP=/usr/bin/grep
ac_cv_path_PKG_CONFIG=/opt/R/arm64/bin/pkg-config
ac_cv_path_jags_bin_path=/usr/local/bin/jags
ac_cv_prog_CXXCPP='clang++ -arch arm64 -std=gnu++14 -E'
ac_cv_prog_ac_ct_CC='clang -arch arm64'
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
ac_cv_prog_cxx_g=yes
## ----------------- ##
## Output variables. ##
## ----------------- ##
CC='clang -arch arm64'
CFLAGS='-falign-functions=64 -Wall -g -O2'
CPPFLAGS='-I/opt/R/arm64/include'
CXX='clang++ -arch arm64 -std=gnu++14'
CXXCPP='clang++ -arch arm64 -std=gnu++14 -E'
CXXFLAGS='-falign-functions=64 -Wall -g -O2'
DEFS='-DPACKAGE_NAME=\"rjags\" -DPACKAGE_TARNAME=\"rjags\" -DPACKAGE_VERSION=\"4\" -DPACKAGE_STRING=\"rjags\ 4\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIBJAGS=1'
ECHO_C='\c'
ECHO_N=''
ECHO_T=''
EGREP='/usr/bin/grep -E'
EXEEXT=''
GREP='/usr/bin/grep'
JAGS_CFLAGS='-I/usr/local/include/JAGS'
JAGS_LIBS='-L/usr/local/lib -ljags'
JAGS_MODDIR='/usr/local/lib/JAGS/modules-4'
JAGS_RPATH=''
LDFLAGS=''
LIBOBJS=''
LIBS='-ljags '
LTLIBOBJS=''
OBJEXT='o'
PACKAGE_BUGREPORT=''
PACKAGE_NAME='rjags'
PACKAGE_STRING='rjags 4'
PACKAGE_TARNAME='rjags'
PACKAGE_URL=''
PACKAGE_VERSION='4'
PATH_SEPARATOR=':'
PKG_CONFIG='/opt/R/arm64/bin/pkg-config'
SHELL='/bin/sh'
ac_ct_CC='clang -arch arm64'
ac_ct_CXX=''
bindir='${exec_prefix}/bin'
build_alias=''
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='${prefix}'
host_alias=''
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
jags_bin_path='/usr/local/bin'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/usr/local'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''
## ----------- ##
## confdefs.h. ##
## ----------- ##
/* confdefs.h */
#define PACKAGE_NAME "rjags"
#define PACKAGE_TARNAME "rjags"
#define PACKAGE_VERSION "4"
#define PACKAGE_STRING "rjags 4"
#define PACKAGE_BUGREPORT ""
#define PACKAGE_URL ""
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_LIBJAGS 1
configure: exit 0