diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index bcc3ef9c..2bef38c7 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -139,6 +139,7 @@ jobs: shell: bash -l {0} run: | cd testingDataset + cat myannopang/gene_families.tsv | cut -f1,2,4 > clusters.tsv ppanggolin panrgp --anno genomes.gbff.list --cluster clusters.tsv --output readclusterpang --cpu $NUM_CPUS ppanggolin annotate --anno genomes.gbff.list --output readclusters --cpu $NUM_CPUS awk 'BEGIN{FS=OFS="\t"} {$1 = $1 OFS $1} 1' clusters.tsv > clusters_with_reprez.tsv; diff --git a/testingDataset/expected_info_files/checksum.txt b/testingDataset/expected_info_files/checksum.txt index c725b1a8..0c375ada 100644 --- a/testingDataset/expected_info_files/checksum.txt +++ b/testingDataset/expected_info_files/checksum.txt @@ -2,4 +2,4 @@ 9d6219523e890b08c467c936590b37436e915840a797ea161c9707041c3b821c stepbystep/gene_families.tsv 5cb88afbc1a49e7d21531d36d5ee3471a87834f4bb82578347dc92231ba0a452 readclusterpang/gene_families.tsv 5cb88afbc1a49e7d21531d36d5ee3471a87834f4bb82578347dc92231ba0a452 myannopang/gene_families.tsv -41511d7c482c0c400a504d5c564605427081917e54aee1e5f37ffda220d2cdb9 test_config/gene_families.tsv +d9698f054a14d8fcea35542c7d8338ea73f6d128bd287adfa01e99be40c80dc4 test_config/gene_families.tsv