.gitpod.yml

image: nfcore/gitpod:latest

tasks:
  - before: |
        wget -qO- get.nextflow.io | bash
        chmod 777 nextflow
        sudo mv nextflow /usr/local/bin/
        pip install tiptop
        pip install nf-core

vscode:
  extensions: # based on nf-core.nf-core-extensionpack
    - codezombiech.gitignore                 # Language support for .gitignore files
    # - cssho.vscode-svgviewer                 # SVG viewer
    - davidanson.vscode-markdownlint         # Markdown/CommonMark linting and style checking for Visual Studio Code
    - eamodio.gitlens                        # Quickly glimpse into whom, why, and when a line or code block was changed
    - EditorConfig.EditorConfig              # override user/workspace settings with settings found in .editorconfig files
    - Gruntfuggly.todo-tree                  # Display TODO and FIXME in a tree view in the activity bar
    - mechatroner.rainbow-csv                # Highlight columns in csv files in different colors
    # - nextflow.nextflow                      # Nextflow syntax highlighting
    - oderwat.indent-rainbow                 # Highlight indentation level
    - streetsidesoftware.code-spell-checker  # Spelling checker for source code

ports:
  - port: 3000
    onOpen: open-preview