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artifact.open()
In the Python API, we allow to artifact.open() tiledbsoma stores.
It'd be great if we could replace the call of open_soma
census <- open_soma()
with this:
census <- artifact.open()
This is how it looks in Python: https://docs.lamin.ai/cellxgene#slice-a-concatenated-array
To make that happen, it'll only be a few lines of changes to the census package:
https://github.com/chanzuckerberg/cellxgene-census/blob/f32c2748e9664cc196bb1758acb22f5a460fe188/api/r/cellxgene.census/R/open.R#L24C1-L38C2
In particular, replacing the s3 path (uri in the code there) via artifact$path so that it works for any tiledbsoma store.
artifact$path
The text was updated successfully, but these errors were encountered:
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Artifact$open()
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In the Python API, we allow to
artifact.open()
tiledbsoma stores.It'd be great if we could replace the call of open_soma
with this:
This is how it looks in Python: https://docs.lamin.ai/cellxgene#slice-a-concatenated-array
To make that happen, it'll only be a few lines of changes to the census package:
https://github.com/chanzuckerberg/cellxgene-census/blob/f32c2748e9664cc196bb1758acb22f5a460fe188/api/r/cellxgene.census/R/open.R#L24C1-L38C2
In particular, replacing the s3 path (uri in the code there) via
artifact$path
so that it works for any tiledbsoma store.The text was updated successfully, but these errors were encountered: