diff --git a/docs/guide/index.md b/docs/guide/index.md
deleted file mode 100644
index 4f1be38..0000000
--- a/docs/guide/index.md
+++ /dev/null
@@ -1,13 +0,0 @@
-# Guide
-
-A step-wise pedagogic tutorial including a quickstart. The notebooks get executed in CI for testing.
-
-Ideally, each feature is explained in a separate clean notebook.
-
-This makes it both easy for the user to understand the documentation, and for the developer to increase test coverage.
-
-```{toctree}
-:maxdepth: 1
-
-bulk_rna_seq
-```
diff --git a/docs/index.md b/docs/index.md
index d48df36..4027ba5 100644
--- a/docs/index.md
+++ b/docs/index.md
@@ -3,16 +3,10 @@
 :end-line: 1
 ```
 
-```{note}
-
-If you aren't the person who used the cookiecutter, make sure you init `pre-commit install` and `gitmoji -i` on the CLI before starting to work on this repository!
-```
-
 ```{toctree}
 :maxdepth: 1
 :hidden:
 
-guide/index
-reference
+nextflow
 changelog
 ```
diff --git a/docs/guide/bulk_rna_seq.ipynb b/docs/nextflow.ipynb
similarity index 100%
rename from docs/guide/bulk_rna_seq.ipynb
rename to docs/nextflow.ipynb
diff --git a/docs/reference.md b/docs/reference.md
deleted file mode 100644
index d3a24e3..0000000
--- a/docs/reference.md
+++ /dev/null
@@ -1,5 +0,0 @@
-# Reference
-
-```{eval-rst}
-.. automodule:: nextflow_lamin_usecases
-```
diff --git a/lamin-project.yaml b/lamin-project.yaml
deleted file mode 100644
index 107ef6e..0000000
--- a/lamin-project.yaml
+++ /dev/null
@@ -1,5 +0,0 @@
-project_name: nextflow-lamin-usecases
-description: Using Lamin with Nextflow
-project_slug: nextflow-lamin-usecases
-repository_name: nextflow-lamin-usecases
-package_name: nextflow_lamin_usecases