🎨 Add tests

docs/quickstart.ipynb

@@ -11,47 +11,54 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "a51faaf3-ee27-43c6-b48d-13be1adb5c46",
+   "id": "07aac587",
    "metadata": {},
    "outputs": [],
    "source": [
-    "from tmp_testing_demo import ExampleClass, example_function"
+    "!lamin init --storage run-tests --modules bionty"
    ]
   },
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "fa758625-efb0-4047-9a03-aa534bf6f78e",
+   "id": "18aa30d9",
    "metadata": {},
    "outputs": [],
    "source": [
-    "example_function(\"A\")"
+    "import lamindb as ln\n",
+    "import pandas as pd\n",
+    "import numpy as np\n",
+    "\n",
+    "ln.track()"
    ]
   },
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "ad22eec0-8f75-4e0b-a132-8a43ccb09b37",
+   "id": "01a61e9b",
    "metadata": {},
    "outputs": [],
    "source": [
-    "ex = ExampleClass(1)"
+    "df = pd.DataFrame({\"a\": np.arange(0, 10)})\n",
+    "\n",
+    "af = ln.Artifact.from_df(df, description=\"test\").save()"
    ]
   },
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "8bf01623-742e-425a-973d-132fc61c3d9c",
+   "id": "728ac9b5",
    "metadata": {},
    "outputs": [],
    "source": [
-    "assert ex.bar() == \"hello\""
+    "!rm -r run-tests\n",
+    "!lamin delete --force run-tests"
    ]
   }
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3 (ipykernel)",
+   "display_name": "lamindb",
    "language": "python",
    "name": "python3"
   },
@@ -65,7 +72,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.12"
+   "version": "3.12.8"
   }
  },
  "nbformat": 4,

pyproject.toml

@@ -9,7 +9,7 @@ authors = [{name = "Lamin Labs", email = "[email protected]"}]
 readme = "README.md"
 dynamic = ["version", "description"]
 dependencies = [
-    "lamindb",
+    "lamindb[bionty]",
 ]
 
 [project.urls]

tests/conftest.py

@@ -0,0 +1,9 @@
+import lamindb_setup as ln_setup
+import pytest
+
+
+@pytest.fixture(scope="session")
+def setup_instance():
+    ln_setup.init(storage="./testdb", modules="bionty")
+    yield
+    ln_setup.delete("testdb", force=True)

tests/test_base.py

@@ -1,7 +1,15 @@
-from tmp_testing_demo import ExampleClass, example_function
+import numpy as np
+import pandas as pd
 
 
-def test_dummy():
-    assert example_function("A") == "a"
-    ex = ExampleClass(1)
-    assert ex.bar() == "hello"
+def test_that_uses_instance(setup_instance):
+    import lamindb as ln
+
+    df = pd.DataFrame({"a": np.arange(0, 10)})
+
+    af = ln.Artifact.from_df(df, description="test").save()
+
+    # clean up artifacts and stuff that might have side effects
+    # generally, be careful with concurrency and try not to write
+    # tests that depend on others
+    af.delete()