Skip to content

Releases: larmarange/broom.helpers

broom.helpers 1.7.0

22 Apr 08:40
Compare
Choose a tag to compare

New features

  • The .assert_package() now uses rlang::check_installed() and
    rlang::is_installed() to check whether needed packages are installed. The
    rlang::check_installed() prompts user to install needed package when run
    interactively. (#147)
  • tidy_add_n() and model_get_n() support for tidycmprsk::crr()
    models (#143)
  • Listing of supported models is now available in supported_models tibble (#145)

Bug fixes

  • Avoiding duplicating rows when applying tidy_add_n() to a mgcv::gam()
    model with smooth terms (#150)

broom.helpers 1.6.0

12 Jan 13:40
Compare
Choose a tag to compare

New supported models

  • Support for plm::plm() models (#140)

New features

  • The .formula_list_to_named_list() now respects the select_single=
    argument for all inputs types. Previously, named lists were ignored.
  • Added new argument .formula_list_to_named_list(null_allowed=) argument
    that works in conjunction with type_check= asserting the class/type of
    the RHS of the formula (or the value of the named list) (#137)
  • Better error message in .formula_list_to_named_list() (#136)

Bug fixes

  • Fix so .formula_list_to_named_list(type_check=) checks RHS of a formula
    and the value of named list. (#138)

broom.helpers 1.5.0

07 Dec 12:44
Compare
Choose a tag to compare

New features

  • New method model_get_coefficients_type.tidycrr() (#128)
  • Updated error messaging about using broom.helpers::tidy_parameters()
    to include the package prefix. This message sometimes appears while
    running gtsummary::tbl_regression() where some users may not be
    aware where the tidy_paramters() function lives. (#129)
  • .formula_list_to_named_list() improvement: it is now possible to add
    a type check (#132)
  • New functions .assert_package() and .get_min_version_required() to
    check for a package's installation status and whether the installed
    version meets the minimum required version from the DESCRIPTION file (#134)

Bug fixes

  • Bug fix for identifying the levels of a logical variable (#125)
  • Bug fix for nnet::multinom() models with a binary outcome (#130)

broom.helpers 1.4.0

30 Sep 12:30
Compare
Choose a tag to compare

New supported models

  • Support for glmmTMB::glmmTMB() models (#119)

New features

  • Function arguments that accept formula-list values now have more flexible inputs. (#121)
    • The passed list may now be a combination of named lists and lists of formulas, e.g. list(trt ~ 1, all_continuous() ~ 2).
    • The shortcut ~ <value> may be now used to indicate everything() ~ <value>

Bug fixes

  • Bug fix for computing n for some binomial models computed
    with lme4::glmer() (#116)
  • Populating effect column when adding reference rows (#117)

broom.helpers 1.3.0

10 Apr 09:05
Compare
Choose a tag to compare

New supported models

  • Support of rstanarm::stan_glm() models
  • Basic support for VGAM::vglm() models (#105)

New features

  • Custom tieder tidy_parameters() based on parameters::model_parameters()
    (#104)
  • Custom tieder tidy_with_broom_or_parameters() (#104)
  • By default, tidy_plus_plus() now uses tidy_with_broom_or_parameters()
  • model_get_coefficients_type() now returns "prop_hazard" for cloglog-binomial
    models (#106)

broom.helpers 1.2.1

01 Mar 07:56
Compare
Choose a tag to compare

Bug fixes

  • Better identification of term labels for interaction terms using sum
    contrasts (#108)
  • Now tidy_add_n() works with multinomial models when y is not coded as
    a factor (#109)
  • glue added to Suggests

broom.helpers 1.2.0

22 Feb 17:20
Compare
Choose a tag to compare

New features

  • model_get_coefficients_type() now returns "relative_risk" for log-binomial
    models (#101)
  • New function tidy_disambiguate_terms() for disambiguating random-effect
    terms in mixed models and new options for tidy_plus_plus():
    disambiguate_terms (TRUE by default) and disambiguate_sep (#98)
  • For mixed models, var_type column is now equal to "ran_pars" or
    "ran_vals" for random-effect parameters and values, based of the
    effect column returned by broom.mixed::tidy() (#90)
  • New contrasts type ("no.contrast") returned by model_list_contrasts()
  • New function tidy_add_n() to add the number of observations (and for
    relevant models the number of events and exposure time) (#64)
  • New option add_n in tidy_plus_plus() (#64)
  • New functions model_get_n(), model_get_weights(), model_get_offset(),
    model_get_response() and model_compute_terms_contributions() (#64)

New supported models

  • Support of lfe::felm() models (#79)
  • Support of brms::brm() models (#89)
  • Basic support of cmprsk::crr() models (#91)
  • Basic support of stats::nls() models (#97)
  • Models with categorical variable and no intercept now supported (#85)
  • Added support for mgcv::gam() models. (#82)

Bug fixes and other changes

  • Minor breaking change: strict argument removed from
    tidy_identify_variables() (#99)
  • Replaced usethis::ui_*() messaging with cli::cli_*() (#94)
  • Bug fix in tidy_add_term_labels() for variables with non standard
    names (#77)
  • Fix in vignette for old versions of rmarkdown (#95)

broom.helpers 1.1.0

24 Nov 08:38
Compare
Choose a tag to compare
  • Minor breaking change: column var_type returned by tidy_identify_variables()
    is now equal to "dichotomous" for categorical variables with only
    2 levels
  • Minor breaking changes: for intercepts terms, tidy_identify_variables()
    now populates variable column by term content, instead of NA (#66)
  • Minor breaking change: If the variables can't be identified by
    tidy_identify_variables(), the variable column is now populated
    with the content of the term column (#63)
  • Exporting select helper utility functions (#65)
    • .generic_selector(): makes it easy to create selecting functions like all_continuous().
    • .select_to_varnames(): converts selecting syntax into character varnames
    • .formula_list_to_named_list(): takes the formula selecting syntax and converts it to a named list.
  • New selecting functions all_continuous(), all_categorical(),
    all_dichotomous(), all_contrasts(), all_intercepts() and all_interaction() for selecting variables
    from models (#54)
  • Added support for multiple imputation models from the {mice}
    package. The model passed must be the un-pooled models, and the
    pooling step included in tidy_fun= (#49 @ddsjoberg)
  • New function tidy_select_variables() to keep/drop
    selected variables in the output (#45)
  • New functions tidy_add_coefficients_type() and
    model_get_coefficients_type to get the type of coefficients
    (generic, logistic, Poisson or proportional hazard) used
    by a model (#46)
  • tidy_add_contrasts() and model_list_contrasts() now return an
    additional column contrasts_type
  • New no_reference_row argument for tidy_add_reference_rows() (#47)
  • New method model_get_nlevels to get the number of levels of categorical variables
  • New column var_nlevels returned by tidy_identify_variables(),
    model_identify_variables() and tidy_plus_plus()
  • Categorical terms can now be customized with a pattern taking into account
    term level, reference level and/or variable label, see model_list_terms_levels()
    and categorical_terms_pattern in tidy_plus_plus() and tidy_add_term_labels (#61)
  • model_list_terms_levels() now returns additional columns (level, reference_level
    contrasts_type, var_label, var_levels and dichotomous)
  • model_list_variables() now returns an additional var_label column
  • The exponentiate argument is now passed to the tidy_*()
    functions, as an attribute attached to the tibble, as well as custom labels
    (variable_labels and term_labels)
  • show_single_row argument now accepts tidyselect notation (#51 @ddsjoberg)
  • tidy_add_estimate_to_reference_rows() now relies on emmeans for
    sum contrasts, allowing to cover a wider range of models
  • Tibbles returned by tidy_* functions also inherits of "broom.helpers"
    class (#56)
  • interaction_sep argument has been added to tidy_plus_plus()
  • Better management of variables with non standard names (#67)
  • .clean_backticks() and .escape_regex() are now exported
  • Bug fix for non standard variable names containing
    a character that would have a special meaning in
    a regular expression (#44)
  • Bug fix in tidy_add_header_rows() for nnet::multinom models:
    label for header rows was missing (#50)
  • Bug fix: now tidy_identify_variables() correctly identify class "integer"
    for this type of variables (#57)
  • Bug fix for tidy_add_header_rows() for continuous variables with a non
    standard name (#70)

broom.helpers 1.0.0

18 Sep 12:44
Compare
Choose a tag to compare

Initial release