Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Lack of functionality to export narrowPeaks files #64

Open
PeteHaitch opened this issue Apr 22, 2022 · 0 comments
Open

Lack of functionality to export narrowPeaks files #64

PeteHaitch opened this issue Apr 22, 2022 · 0 comments

Comments

@PeteHaitch
Copy link

I noticed this while reviewing Bioconductor/Contributions#2568
The lack of an export method for narrowPeaks files meant that the authors opted to roll their own, before eventually moving to plyranges:write_narrowpeaks().

Should the plyranges:write_narrowpeaks() functionality be migrated to rtracklayer or BiocIO (I'm not really sure of the intended relationship between these 2 package) and it become a wrapper (like the other plyranges::write_*() functions seem to be).
Tagging @sa-lee who might know some background or further context on the issue?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant