From dff44abcb60cef3e9daeac48d53fb897da6b2f02 Mon Sep 17 00:00:00 2001 From: Jon Drobny Date: Mon, 8 Mar 2021 10:27:49 -0600 Subject: [PATCH] Further updates to paper. --- paper/paper.md | 16 ++++++++++++---- 1 file changed, 12 insertions(+), 4 deletions(-) diff --git a/paper/paper.md b/paper/paper.md index d9e50d0..6a9c8b1 100644 --- a/paper/paper.md +++ b/paper/paper.md @@ -74,11 +74,15 @@ RustBCA includes multiple example input files, under the examples/ folder on the First, an example of 2 keV helium ions at normal incidence on a layered titanium dioxide, aluminum, and silicon target can be run in 2D with: - `cargo run --release examples/layered_target.toml` +``` +cargo run --release examples/layered_target.toml +``` The same example using the 1D layered geometry can be run with: - `cargo run --release 1D examples/layered_target_1D.toml` +``` +cargo run --release 1D examples/layered_target_1D.toml +``` ![Helium implantation depth distributions at 2 keV in a layered TiO2-Al-Si target.](layered_target.png) @@ -88,7 +92,9 @@ First, an example of 2 keV helium ions at normal incidence on a layered titanium Second, as an example of the capability of RustBCA to handle 2D geometry, the trajectories of 1 keV hydrogen on a circular cross-section of boron-nitride can be simulated. - `cargo run --release examples/boron_nitride.toml` +``` +cargo run --release examples/boron_nitride.toml +``` ![Trajectories of hydrogen and mobile boron and nitrogen resulting from 10 1 keV hydrogen ions impacting on a circular cross-section boron-nitride target.](H_B_N.png) @@ -96,7 +102,9 @@ First, an example of 2 keV helium ions at normal incidence on a layered titanium Third, the 2D boron nitride example can be run as a spherical boron nitride dust grain, by running the following command: -`cargo run --release SPHERE examples/boron_nitride_sphere.toml` +``` +cargo run --release SPHERE examples/boron_nitride_sphere.toml +``` The trajectories can be plotted in 3D with mayavi using `do_trajectory_plot_3d()` or in 2D with matplotlib using `do_trajectory_plot()` in `scripts/rustbca.py`.