Index out of range

[msarguru]

Hi, thank you for the iLDSC. Trying it on a sumstat.gz that works for LDSC, returns the index out of range error. and I am using the following syntax.
Any suggestions, would be greatly appreciated.
./ldsc.py
--h2 ../sumstats/PSS.EUR.pdt10.nomerge.sumstats.gz
--ref-ld-chr ./EUR_1000G/Full_cisLD/
--out WMH_EUR_ildsc
--w-ld-chr ../ldsc/eur_w_ld_chr/
--print-coefficients

Beginning analysis at Wed Aug 14 20:19:44 2024
Reading summary statistics from ../sumstats/PSS.EUR.pdt10.nomerge.sumstats.gz ...
Read summary statistics for 5355832 SNPs.
Reading reference panel LD Score from ./EUR_1000G/Full_cisLD/[1-22] ... (ldscore_fromlist)
Traceback (most recent call last):
File "ildsc.py", line 651, in
sumstats.estimate_h2(args, log)
File "/annotation/ldsc-F/ildsc/ldscore/sumstats.py", line 329, in estimate_h2
args, log, args.h2)
File "/annotation/ldsc-F/ildsc/ldscore/sumstats.py", line 245, in _read_ld_sumstats
ref_ld = _read_ref_ld(args, log)
File "/annotation/ldsc-F/ildsc/ldscore/sumstats.py", line 82, in _read_ref_ld
'reference panel LD Score', ps.ldscore_fromlist)
File "/annotation/ldsc-F/ildsc/ldscore/sumstats.py", line 154, in _read_chr_split_files
out = parsefunc(_splitp(chr_arg), _N_CHR, **kwargs)
File "/annotation/ldsc-F/ildsc/ldscore/parse.py", line 103, in ldscore_fromlist
y = ldscore(fh, num)
File "/annotation/ldsc-F/ildsc/ldscore/parse.py", line 147, in ldscore
first_fh = sub_chr(fh, chrs[0]) + suffix
IndexError: list index out of range

Analysis finished at Wed Aug 14 20:19:53 2024
Total time elapsed: 9.15s
Traceback (most recent call last):
File "ildsc.py", line 651, in
sumstats.estimate_h2(args, log)
File "/annotation/ldsc-F/ildsc/ldscore/sumstats.py", line 329, in estimate_h2
args, log, args.h2)
File "/annotation/ldsc-F/ildsc/ldscore/sumstats.py", line 245, in _read_ld_sumstats
ref_ld = _read_ref_ld(args, log)
File "/annotation/ldsc-F/ildsc/ldscore/sumstats.py", line 82, in _read_ref_ld
'reference panel LD Score', ps.ldscore_fromlist)
File "/annotation/ldsc-F/ildsc/ldscore/sumstats.py", line 154, in _read_chr_split_files
out = parsefunc(_splitp(chr_arg), _N_CHR, **kwargs)
File "/annotation/ldsc-F/ildsc/ldscore/parse.py", line 103, in ldscore_fromlist
y = ldscore(fh, num)
File "/annotation/ldsc-F/ildsc/ldscore/parse.py", line 147, in ldscore
first_fh = sub_chr(fh, chrs[0]) + suffix
IndexError: list index out of range

[msarguru]

Update. Got this sorted, turned out issue with the filenaming.. also few suggestions on the readme for git.. one has to use
git sparse-checkout set --no-cone *
to get all the required ldscore files.

Would love an addition on the interpretation of the output.. what each column refers to, etc. Thanks again