mkdocs.yml

# Project information
site_name: "Hitchhacker's guide to the brain"
repo_name: 'learn-neuroimaging/hitchhackers_guide_brain'
repo_url: 'https://github.com/learn-neuroimaging/hitchhackers_guide_brain'
# docs_dir: alternative_path # docs/ is the default folder
copyright: "CC-BY 4.0"

# This will use Material them
theme:
  name: 'material'
  language: 'en'
  palette:
    primary: 'light blue'
    accent: 'light blue'

# Pages
nav:
  - Welcome: "index.md"
  - Before you start:
    - About: "10-before-you-start.md"
    - Programming: "11-programming.md"
    - Version control: "12-version-control.md"
    - Organizing your files: "13-data-code-management.md"
  - Planning your study:
      - About: "20-planning-your-study.md"
      - Reproducible research: "21-reproducible-neuroimaging-research.md"
      - Preregistration: "22-preregistration.md"
  - Getting data:
    - About: "30-getting-data.md"
    - Data repositories: "31-data-repositories.md"
  - Processing:
    - About: "40-processing.md"
    - Computing: "41-computing.md"
    - MRI: "42-analysis-software-MRI.md"
    - MEEG: "43-analysis-software-MEEG.md"
    - Other physiological signals: "44-analysis-software-physio.md"
    - Learning neuroimaging: "45-learning-neuroimaging.md"
    - Neuroimaging resources: "46-neuroimaging-resources.md"
  - Analysis:
    - About: "50-analysis.md"
    - Statistics: "51-statistics.md"
    - Machine learning and Deep learning: "52-machine-and-deep-learning.md"
    - Genetic software: "53-genetics-software.md"
  - Quality control:
      - About: "60-quality-control.md"
  - Reporting methods and results:
    - About: "70-reporting-methods-and-results.md"
  - Sharing data, code and results:
    - About: "80-sharing-data-code-and-results.md"
    - Open science: "81-open-science.md"
  - Appendix: "99-appendix.md"

# list of extension
markdown_extensions:
  - admonition
  - pymdownx.details