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add.php
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add.php
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<!DOCTYPE html>
<html>
<head>
<title>Add values to database</title>
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge,chrome=1">
<meta name="description" content="Demo project">
<meta name="viewport" content="width=device-width, initial-scale=1">
<link rel="stylesheet" href="https://netdna.bootstrapcdn.com/bootstrap/3.0.3/css/bootstrap.min.css">
<style type="text/css"></style>
<script src="//ajax.googleapis.com/ajax/libs/jquery/1.11.3/jquery.min.js"></script>
<style>
#newFields input {
display:block;
}
</style>
<script>
$(function() {
var input = $('<input type="text" name="ZXY[]" />');
var newFields = $('');
$('#NumBead').bind('blur keyup change', function() {
var n = this.value || 0;
if (n+1) {
if (n > newFields.length) {
addFields(n);
} else {
removeFields(n);
}
}
});
function addFields(n) {
for (i = newFields.length; i < n; i++) {
var newInput = input.clone();
newFields = newFields.add(newInput);
newInput.appendTo('#newFields');
}
}
function removeFields(n) {
var removeField = newFields.slice(n).remove();
newFields = newFields.not(removeField);
}
});
</script>
</head>
<body>
<!--Load the AJAX API-->
<script type="text/javascript" src="https://www.google.com/jsapi"></script>
<!-- Connection to the database -->
<?php
try
{
$bdd = new PDO('mysql:host=localhost;dbname=PSF;charset=utf8','root','admin');
}
catch (Exception $e)
{
die('Erreur : ' . $e->getMessage());
}
//Allows to get the name of the tables from the PSF database
$choiceMicroscope = $bdd->query('select table_name from information_schema.tables where table_schema="PSF"');
?>
<center>
<form method="POST" action="add.php" onsubmit="return confirm('Verify the data. Are you ok with what you entered ?');" enctype="multipart/form-data">
<select id="Microscope" name="Microscope" onChange="hideshow();" onMouseDown="document.getElementById('ObjMagn').selectedIndex=0;" required>
<option value="None">Select Microscope</option>
<?php
//Array for the different microscopes
$table_list = array();
//Security for getting the microscope without any SQL injections
$numMic = 0;
while($choice = $choiceMicroscope->fetch())
{
?>
<!-- Loop to go through the different microscopes and get them in a menu -->
<option value="<?php echo $numMic ?>"><?php echo $choice['table_name']; ?></option>
<?php
//Incrementation for the safety
$numMic++;
//Add the microscope to the table
array_push($table_list,$choice['table_name']);
}
?>
</select>
<br>
<!-- Menu with all the ObjMagn possible -->
<select id="ObjMagn" name="ObjMagn" style="display:none" onChange="hideshow();" required>
<option value="">Select Objective Magnification</option>
<option value="40x">40x</option>
<option value="60x">60x</option>
<option value="63x">63x</option>
<option value="100x">100x</option>
<option value="20x">20x</option>
</select>
<!-- Menu with all the ObjNA possible -->
<select id="NA" name="NA" style="display:none" required>
<option value="">Select Objective Numerical Aperture</option>
<option value="1.3">1.3</option>
<option value="1.4">1.4</option>
<option value="1.42">1.42</option>
<option value="1.46">1.46</option>
<option value="0.75">0.75</option>
<option value="0.95">0.95</option>
<option value="1.0">1.0</option>
</select>
<!-- Menu with all the AU possible -->
<select id="AU" name="AU" style="display:none" required>
<option value= "">Select Airy Unit</option>
<option value= "1">1</option>
<option value="Max">Max</option>
</select>
<br>
<!-- Calendar to add the date of the values -->
Date of the values (required) Format is YYYY-MM-DD
<input type="date" name="Date" id="Date" required />
<br>
<!-- Number of beads. Simple or multiple values, separated by "," -->
Number of Bead (required)
<input type="number" name="NumBead" id="NumBead" required multiple>
<br>
Actual values for each bead in this format Z;X;Y (you can copy from the MIPs plugin output FWHMValues.txt)
<div id="newFields"></div>
<br>
Your name (required)
<input type="text" name="Firstname" value="Unknown" required>
<br>
<!-- Text area to enter as much settings as you want -->
Settings (not required)
<textarea name="Settings" id="Settings"></textarea>
<br>
Comments (not required)
<input type="text" name="Comments" id="Comments" value="No comments">
<br>
You can upload one image here
<input type="file" name="image">
<br>
<!--Upload a picture
<input type="file" name="uploadFile">
<br>-->
<!-- Input button -->
<input type="Submit" value="Send" id="Send" name="Send" style="display:none">
</form >
<?php
//echo ;
?>
</center>
<script type='text/javascript'>
//Function to hide and/or show the different menus depending of the previous one(s)
function hideshow()
{
var obj= document.getElementById("ObjMagn"); //Values of the menu ObjMagn
var sub= document.getElementById("Send"); //Get the button to hide/show it
var au= document.getElementById("AU"); //Values of the menu AU
var mic = document.getElementById("Microscope"); //Values of the menu Microscope
var na = document.getElementById("NA"); //Values of the menu NA
var array = <?php echo json_encode($table_list); ?>; //Array of the microscopes encoded in JS
var micChoice1 = mic.options[mic.selectedIndex].value; //Get the number of the microscope selected
var micChoice = array[micChoice1]; //Name of the selected microscope
var objChoice = obj.options[obj.selectedIndex].value; //Get the Obj menu to hide/show it
//If the microscope selected is different than a LSM
if (micChoice != "None" && micChoice.substr(0,3) != "LSM")
{
//If it's CellR
if (micChoice == "CellR")
{
//Only show the corresponding options
obj.style.display="block";
obj[1].style.display="block";
obj[2].style.display="block";
obj[3].style.display="none";
obj[4].style.display="none";
obj[5].style.display="block";
sub.style.display="block";
au.required=false;
au.style.display="none";
//Hide the menu
if(objChoice != "None")
{
switch (objChoice)
{
case "60x" :
na.style.display="block";
na[0].style.display="none";
na[1].style.display="none";
na[2].style.display="none";
na[3].style.display="block";
na.selectedIndex = 3;
na[4].style.display="none";
na[5].style.display="none";
na[6].style.display="none";
na[7].style.display="none";
break;
case "20x" :
na.style.display="block";
na[0].style.display="none";
na[1].style.display="none";
na[2].style.display="none";
na[3].style.display="none";
na.selectedIndex = 5;
na[4].style.display="none";
na[5].style.display="block";
na[6].style.display="none";
na[7].style.display="none";
break;
case "40x" :
na.style.display="block";
na[0].style.display="none";
na[1].style.display="none";
na[2].style.display="none";
na[3].style.display="none";
na.selectedIndex = 6;
na[4].style.display="none";
na[5].style.display="none";
na[6].style.display="block";
na[7].style.display="none";
}
}
//Show it
else
{
na.style.display="none";
}
}
//If it's the AxioObserver
else
{
obj.style.display="block";
obj[1].style.display="block";
obj[2].style.display="none";
obj[3].style.display="block";
obj[4].style.display="block";
obj[5].style.display="none";
sub.style.display="block";
au.required=false;
au.style.display="none";
//Depending on the choice we show/hide the corresponding options
if(objChoice != "None")
{
switch (objChoice)
{
case "40x" :
//alert("40x");
na.style.display="block";
na[0].style.display="none";
na[1].style.display="block";
na.selectedIndex = 1;
na[2].style.display="none";
na[3].style.display="none";
na[4].style.display="none";
na[5].style.display="none";
na[6].style.display="none";
na[7].style.display="none";
break;
case "63x" :
na.style.display="block";
na[0].style.display="none";
na[1].style.display="none";
na[2].style.display="block";
na.selectedIndex = 2;
na[3].style.display="none";
na[4].style.display="none";
na[5].style.display="none";
na[6].style.display="none";
na[7].style.display="none";
break;
case "100x" :
na.style.display="block";
na[0].style.display="none";
na[1].style.display="none";
na[2].style.display="block";
na.selectedIndex = 2;
na[3].style.display="none";
na[4].style.display="none";
na[5].style.display="none";
na[6].style.display="none";
na[7].style.display="none";
break;
}
}
//else hide it
else
{
na.style.display="none";
}
}
}
//Test if the microscope's a LSM
else if(micChoice != "None" && micChoice.substr(0,3) == "LSM")
{
//Depending on the choices, show/hide the corresponding options
switch (micChoice)
{
case "LSM700":
obj.style.display="block";
obj[1].style.display="block";
obj[2].style.display="none";
obj[3].style.display="block";
obj[4].style.display="none";
obj[5].style.display="none";
sub.style.display="block";
au.required = true;
au.style.display="block";
if(objChoice != "None")
{
switch (objChoice)
{
case "40x" :
na.style.display="block";
na[0].style.display="none";
na[1].style.display="block";
na.selectedIndex = 1;
na[2].style.display="none";
na[3].style.display="none";
na[4].style.display="none";
na[5].style.display="none";
na[6].style.display="none";
na[7].style.display="none";
break;
case "63x" :
na.style.display="block";
na[0].style.display="none";
na[1].style.display="none";
na[2].style.display="block";
na.selectedIndex = 2;
na[3].style.display="none";
na[4].style.display="none";
na[5].style.display="none";
na[6].style.display="none";
na[7].style.display="none";
break;
}
}
else
{
na.style.display="none";
}
break;
case "LSM710":
obj.style.display="block";
obj[1].style.display="block";
obj[2].style.display="none";
obj[3].style.display="none";
obj[4].style.display="none";
obj[5].style.display="block";
sub.style.display="block";
au.required = true;
au.style.display="block";
if(objChoice != "None")
{
switch (objChoice)
{
case "40x" :
na.style.display="block";
na[0].style.display="block";
na[1].style.display="block";
na[2].style.display="block";
na.selectedIndex = 0;
na[3].style.display="none";
na[4].style.display="none";
na[5].style.display="none";
na[6].style.display="none";
na[7].style.display="none";
break;
case "20x" :
na.style.display="block";
na[0].style.display="none";
na[1].style.display="none";
na[2].style.display="none";
na.selectedIndex = 7;
na[3].style.display="none";
na[4].style.display="none";
na[5].style.display="none";
na[6].style.display="none";
na[7].style.display="block";
break;
}
}
else
{
na.style.display="none";
}
break;
case "LSM780":
obj.style.display="block";
obj[1].style.display="none";
obj[2].style.display="none";
obj[3].style.display="block";
obj[4].style.display="block";
obj[5].style.display="none";
sub.style.display="block";
au.required = true;
au.style.display="block";
if(objChoice != "None")
{
switch (objChoice)
{
case "63x" :
na.style.display="block";
na[0].style.display="none";
na[1].style.display="none";
na[2].style.display="block";
na.selectedIndex = 2;
na[3].style.display="none";
na[4].style.display="none";
na[5].style.display="none";
na[6].style.display="none";
na[7].style.display="none";
break;
case "100x" :
na.style.display="block";
na[0].style.display="none";
na[1].style.display="none";
na[2].style.display="none";
na[3].style.display="none";
na[4].style.display="block";
na.selectedIndex = 4;
na[5].style.display="none";
na[6].style.display="none";
na[7].style.display="none";
}
}
else
{
na.style.display="none";
}
break;
case "LSM880":
obj.style.display="block";
obj[1].style.display="block";
obj[2].style.display="none";
obj[3].style.display="block";
obj[4].style.display="none";
obj[5].style.display="none";
sub.style.display="block";
au.required = true;
au.style.display="block";
if(objChoice != "None")
{
switch (objChoice)
{
case "40x" :
na.style.display="block";
na[0].style.display="none";
na[1].style.display="none";
na[2].style.display="block";
na.selectedIndex = 2;
na[3].style.display="none";
na[4].style.display="none";
na[5].style.display="none";
na[6].style.display="none";
na[7].style.display="none";
break;
case "63x" :
na.style.display="block";
na[0].style.display="none";
na[1].style.display="none";
na[2].style.display="block";
na.selectedIndex = 2;
na[3].style.display="none";
na[4].style.display="none";
na[5].style.display="none";
na[6].style.display="none";
na[7].style.display="none";
}
}
else
{
na.style.display="none";
}
break;
}
}
else
{
obj.style.display="none";
sub.style.display="none";
au.required=false;
au.style.display="none";
na.style.display="none";
}
}
</script>
<?php
//$NumberBead = $_POST['NumBead'];
/*echo $NumberBead;
$ActVal = $_POST['ZXY'];
for ($i=0; $i<$NumberBead;$i++)
{
$ZXY = preg_split("/[;]+/", $ActVal[$i]);
echo "X :"+$ZXY[1]+" Y : "+$ZXY[2]+" Z: "+$ZXY[0];
}
*/
//If submit button clicked
if(isset($_POST['Send']))
{
//for($n=1;$n<=$NumberBead;$n++)
//{
//Get all the variables
$Microscope = $table_list[$_POST['Microscope']];
$Date = $_POST['Date'];
$NumberBead = $_POST['NumBead'];
$ObjMagn = $_POST['ObjMagn'];
$ObjNA = $_POST['NA'];
$AU = $_POST['AU'];
$ActVal = $_POST['ZXY'];
$Settings = $_POST['Settings'];
$NameUser = $_POST['Firstname'];
$Comments = $_POST['Comments'];
//If the microscope's a LSM
if(preg_match('/LSM/i',$Microscope))
{
//Get the theoretical values by a secured request
$query = "Select LTVx,LTVy,LTVz from $Microscope where ObjMagn=? and ROUND(ObjNA)=ROUND(?) AND AU = ?;";
$stmt = $bdd->prepare($query);
$stmt -> execute(array($ObjMagn,$ObjNA,$AU));
$Values = $stmt->fetch();
//Get the values for each dimension
$LTVx = $Values['LTVx'];
$LTVy = $Values['LTVy'];
$LTVz = $Values['LTVz'];
if ($LTVx == "")
$LTVx = 0;
if ($LTVy == "")
$LTVy = 0;
if ($LTVz == "")
$LTVz = 0;
//Get the different values separated by ","
//$NumberBead = $NumberBead;
//If the number of values for each field is different, then fail
/*if ((sizeof($NumberBead) != sizeof($LAVx)) || (sizeof($NumberBead) != sizeof($LAVy)) || (sizeof($NumberBead) != sizeof($LAVz)))
{
echo '<meta http-equiv="Refresh" content="0;url=fail.php">';
}
//Else ok continue
else
{*/
//For each value add it to the database by a secure request
for ($i=0; $i<$NumberBead;$i++)
{
//$LAVx = preg_split("/[,]+/", $LAVx);
//$LAVy = preg_split("/[,]+/", $LAVy);
//$LAVz = preg_split("/[,]+/", $LAVz);
//echo "LSM";
//echo $i+1;
//echo $ActVal[$i];
$ZXY = preg_split("/[;]+/", $ActVal[$i]);
//echo $ZXY[0];
$query="Insert into $Microscope (Date,NumberBead,ObjMagn,ObjNA,AU,LTVx,LTVy,LTVz,LAVx,LAVy,LAVz,NameUser,Settings,Comment)
VALUES (?,?,?,?,?,?,?,?,?,?,?,?,?,?);";
$stmt = $bdd->prepare($query);
$stmt->execute(array( $Date, $i+1,
$ObjMagn, $ObjNA, $AU, $LTVx, $LTVy, $LTVz, $ZXY[1],
$ZXY[2], $ZXY[0], $NameUser, $Settings,$Comments));
/*$query2="Insert into $Microscope (Date,NumberBead,ObjMagn,ObjNA,AU,LTVx,LTVy,LTVz,LAVx,LAVy,LAVz,NameUser,Settings,Comment)
VALUES ($Date, $i+1,
$ObjMagn, $ObjNA, $AU, $LTVx, $LTVy, $LTVz, $ZXY[1],
$ZXY[2], $ZXY[0], $NameUser, $Settings,$Comments);";
echo $query2;*/
}
if(isset($_FILES['image'])){
$errors= array();
$file_name = $_FILES['image']['name'];
$file_size =$_FILES['image']['size'];
$file_tmp =$_FILES['image']['tmp_name'];
$file_type=$_FILES['image']['type'];
$file_ext=strtolower(end(explode('.',$_FILES['image']['name'])));
$expensions= array("jpeg","jpg","png","tif");
/*if(in_array($file_ext,$expensions)=== false){
$errors[]="extension not allowed, please choose a JPEG or PNG file.";
}*/
/*if($file_size > 2097152){
$errors[]='File size must be excately 2 MB';
}*/
$folder='images'.DIRECTORY_SEPARATOR.$Microscope.DIRECTORY_SEPARATOR.$ObjMagn.DIRECTORY_SEPARATOR.$ObjNA.DIRECTORY_SEPARATOR.$Date.DIRECTORY_SEPARATOR.$AU.DIRECTORY_SEPARATOR;
if(empty($errors)==true){
if(!file_exists($folder))
{
mkdir($folder,0777,true);
}
move_uploaded_file($file_tmp,$folder."Image.".$file_ext);
//echo realpath(dirname(__FILE__));
//echo "Success";
}
else{
print_r($errors);
}
}
//Then go the success page
echo '<meta http-equiv="Refresh" content="0;url=success.php">';
//}
}
//If it's not a LSM
else
{
//Get the theoretical values
$query = "Select LTVx,LTVy,LTVz from $Microscope where ObjMagn=? and ROUND(ObjNA)=ROUND(?) ;";
$stmt = $bdd->prepare($query);
$stmt->execute(array($ObjMagn,$ObjNA));
$Values = $stmt->fetch();
//Get the values for each dimension
$LTVx =$Values['LTVx'];
$LTVy = $Values['LTVy'];
$LTVz =$Values['LTVz'];
if ($LTVx == "")
$LTVx = 0;
if ($LTVy == "")
$LTVy = 0;
if ($LTVz == "")
$LTVz = 0;
//Get the different values separated by ","
/*$NumberBead = preg_split("/[,]+/", $NumberBead);
$LAVx = preg_split("/[,]+/", $LAVx);
$LAVy = preg_split("/[,]+/", $LAVy);
$LAVz = preg_split("/[,]+/", $LAVz);*/
//If the number of values for each field is different, then fail
/*if ((sizeof($NumberBead) != sizeof($LAVx)) || (sizeof($NumberBead) != sizeof($LAVy)) || (sizeof($NumberBead) != sizeof($LAVz)))
{
echo '<meta http-equiv="Refresh" content="0;url=fail.php">';
}
//Else ok continue
else
{*/
//If it's the CellR
if ($Microscope == "CellR")
{
//For each value add it to the database by a secure request
for ($i=0; $i<$NumberBead;$i++)
{
//echo "CellR";
//echo $ActVal[$i];
$ZXY = preg_split("/[;]+/", $ActVal[$i]);
//echo $ZXY[0];
$query="Insert into $Microscope (Date,NumberBead,ObjMagn,ObjNA,LTVx,LTVy,LTVz,LAVx,LAVy,LAVz,NameUser,Settings,Comment)
VALUES (?,?,?,?,?,?,?,?,?,?,?,?,?);";
$stmt = $bdd->prepare($query);
$stmt->execute(array( $Date, $i+1,
$ObjMagn, $ObjNA, $LTVx,
$LTVy, $LTVz, $ZXY[1],
$ZXY[2], $ZXY[0],$NameUser, $Settings,$Comments));
}
}
//If it's the AxioObserver
else
{
//For each value add it to the database by a secure request
for ($i=0; $i<$NumberBead;$i++)
{
//echo $ActVal[$i];
$ZXY = preg_split("/[;]+/", $ActVal[$i]);
//echo $ZXY[0];
$query="Insert into $Microscope (Date,NumberBead,ObjMagn,ObjNA,LTVx,LTVy,LTVz,LAVx,LAVy,LAVz,NameUser,Settings,Comment)
VALUES (?,?,?,?,?,?,?,?,?,?,?,?,?);";
//echo $query;
//echo "X :"+$ZXY[1]+" Y : "+$ZXY[2]+" Z: "+$ZXY[0];
$stmt = $bdd->prepare($query);
$stmt->execute(array( $Date, $i+1,
$ObjMagn, $ObjNA, $LTVx,
$LTVy, $LTVz, $ZXY[1],
$ZXY[2], $ZXY[0],$NameUser, $Settings,$Comments));
}
}
if(isset($_FILES['image'])){
$errors= array();
$testname = "Image";
$file_name = $_FILES['image']['name'];
$file_size =$_FILES['image']['size'];
$file_tmp =$_FILES['image']['tmp_name'];
$file_type=$_FILES['image']['type'];
$file_ext=strtolower(end(explode('.',$_FILES['image']['name'])));
$expensions= array("jpeg","jpg","png","tif");
/*if(in_array($file_ext,$expensions)=== false){
$errors[]="extension not allowed, please choose a JPEG or PNG file.";
}*/
/*if($file_size > 2097152){
$errors[]='File size must be excately 2 MB';
}*/
if(preg_match('/LSM/i', $Microscope))
{
$folder='images'.DIRECTORY_SEPARATOR.$Microscope.DIRECTORY_SEPARATOR.$ObjMagn.DIRECTORY_SEPARATOR.$ObjNA.DIRECTORY_SEPARATOR.$Date.DIRECTORY_SEPARATOR.$AU.DIRECTORY_SEPARATOR;
}
else
{
$folder='images'.DIRECTORY_SEPARATOR.$Microscope.DIRECTORY_SEPARATOR.$ObjMagn.DIRECTORY_SEPARATOR.$ObjNA.DIRECTORY_SEPARATOR.$Date.DIRECTORY_SEPARATOR;
}
if(empty($errors)==true){
if(!file_exists($folder))
{
mkdir($folder,0777,true);
}
move_uploaded_file($file_tmp,$folder."Image.".$file_ext);
//echo realpath(dirname(__FILE__));
//echo "Success";
}
else{
print_r($errors);
}
}
//Then refresh to success page
echo '<meta http-equiv="Refresh" content="0;url=success.php">';
//}
}
//echo $test;
//}
//move_uploaded_file($_FILES['uploadFile']['tmp_name'], "\\\\nas.cci.sahlgrenska.gu.se\\GEMENSAM\\Test\\{$_FILES['uploadFile']['Test']}");
}
?>
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