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I noticed that NR is off by the size of a VCF header, as if NR was set before header is removed (the header normally doesn't print with -c vcf flag).
NR
-c vcf
This means if my VCF has header of 10 lines, the first variant is at NR==11, which is not expected.
NR==11
The text was updated successfully, but these errors were encountered:
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I noticed that
NR
is off by the size of a VCF header, as ifNR
was set before header is removed (the header normally doesn't print with-c vcf
flag).This means if my VCF has header of 10 lines, the first variant is at
NR==11
, which is not expected.The text was updated successfully, but these errors were encountered: