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lianos

adds taxonomy ids to species_info outputs

Feb 18, 2025

a51778d · Feb 18, 2025

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Name		Name	Last commit message	Last commit date
parent directory ..
figures		figures
GeneSetDb-class.Rd		GeneSetDb-class.Rd
SparrowResult-utilities.Rd		SparrowResult-utilities.Rd
SparrowResult.Rd		SparrowResult.Rd
addGeneSetMetadata.Rd		addGeneSetMetadata.Rd
all.equal.GeneSetDb.Rd		all.equal.GeneSetDb.Rd
annotateGeneSetMembership.Rd		annotateGeneSetMembership.Rd
calculateIndividualLogFC.Rd		calculateIndividualLogFC.Rd
collectionMetadata.Rd		collectionMetadata.Rd
combine-GeneSetDb-GeneSetDb-method.Rd		combine-GeneSetDb-GeneSetDb-method.Rd
combine-SparrowResult-SparrowResult-method.Rd		combine-SparrowResult-SparrowResult-method.Rd
conform.Rd		conform.Rd
conversion.Rd		conversion.Rd
convertIdentifiers.Rd		convertIdentifiers.Rd
corplot.Rd		corplot.Rd
eigenWeightedMean.Rd		eigenWeightedMean.Rd
examples.Rd		examples.Rd
failWith.Rd		failWith.Rd
featureIdMap.Rd		featureIdMap.Rd
featureIds.Rd		featureIds.Rd
geneSet.Rd		geneSet.Rd
geneSetCollectionURLfunction.Rd		geneSetCollectionURLfunction.Rd
geneSetSummaryByGenes.Rd		geneSetSummaryByGenes.Rd
geneSets.Rd		geneSets.Rd
geneSetsStats.Rd		geneSetsStats.Rd
getKeggCollection.Rd		getKeggCollection.Rd
getMSigCollection.Rd		getMSigCollection.Rd
getPantherCollection.Rd		getPantherCollection.Rd
getReactomeCollection.Rd		getReactomeCollection.Rd
goseq.Rd		goseq.Rd
gsdScore.Rd		gsdScore.Rd
gskey.Rd		gskey.Rd
hasGeneSet.Rd		hasGeneSet.Rd
hasGeneSetCollection.Rd		hasGeneSetCollection.Rd
incidenceMatrix.Rd		incidenceMatrix.Rd
iplot.Rd		iplot.Rd
is.active.Rd		is.active.Rd
logFC.Rd		logFC.Rd
mgheatmap.Rd		mgheatmap.Rd
mgheatmap2.Rd		mgheatmap2.Rd
msg.Rd		msg.Rd
ora.Rd		ora.Rd
p.matrix.Rd		p.matrix.Rd
randomGeneSetDb.Rd		randomGeneSetDb.Rd
renameCollections.Rd		renameCollections.Rd
renameRows.Rd		renameRows.Rd
results.Rd		results.Rd
scale_rows.Rd		scale_rows.Rd
scoreSingleSamples.Rd		scoreSingleSamples.Rd
seas.Rd		seas.Rd
sparrow_methods.Rd		sparrow_methods.Rd
species_info.Rd		species_info.Rd
ssGSEA.normalize.Rd		ssGSEA.normalize.Rd
sub-GeneSetDb-ANY-ANY-ANY-method.Rd		sub-GeneSetDb-ANY-ANY-ANY-method.Rd
subset.GeneSetDb.Rd		subset.GeneSetDb.Rd
subsetByFeatures.Rd		subsetByFeatures.Rd
validateInputs.Rd		validateInputs.Rd
volcanoPlot.Rd		volcanoPlot.Rd
volcanoStatsTable.Rd		volcanoStatsTable.Rd
zScore.Rd		zScore.Rd
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